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Open data
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Basic information
Entry | Database: PDB / ID: 2m8y | ||||||||||||||||||||
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Title | Structure of d[CGCGAAGCATTCGCG] hairpin | ||||||||||||||||||||
![]() | DNA (5'-D(*![]() ![]() Function / homology | ![]() ![]() Method | ![]() Model details | lowest energy, model1 | ![]() Lim, K.W. / Phan, A.T. | ![]() ![]() Title: Structural basis of DNA quadruplex-duplex junction formation. Authors: Lim, K.W. / Phan, A.T. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 105.4 KB | Display | ![]() |
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PDB format | ![]() | 86.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 2m8zC ![]() 2m90C ![]() 2m91C ![]() 2m92C ![]() 2m93C C: citing same article ( |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 4594.986 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: DGSA-distance geometry simulated annealing, Distance-restrained molecular dynamics Software ordinal: 1 | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 / Representative conformer: 1 |