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- PDB-2m6v: Solution NMR structure of the d(GGGTTGGGTTTTGGGTGGG) quadruplex i... -
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Basic information
Entry | Database: PDB / ID: 2m6v | ||||||||||||||||||||
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Title | Solution NMR structure of the d(GGGTTGGGTTTTGGGTGGG) quadruplex in sodium conditions | ||||||||||||||||||||
![]() | DNA (5'-D(*![]() ![]() ![]() Function / homology | ![]() ![]() Method | ![]() ![]() ![]() Model details | lowest energy, model1 | ![]() Karsisiotis, A.I. / Webba da Silva, M. | ![]() ![]() Title: Encoding canonical DNA quadruplex structure. Authors: Dvorkin, S.A. / Karsisiotis, A.I. / Webba da Silva, M. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 129.2 KB | Display | ![]() |
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PDB format | ![]() | 108.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 2m6wC ![]() 5j05C ![]() 5j4pC ![]() 5j4wC ![]() 5j6uC C: citing same article ( |
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Similar structure data | |
Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 6034.863 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
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NMR experiment |
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Sample preparation
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Sample |
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Sample conditions |
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-NMR measurement
NMR spectrometer | Type: Varian VNMRS 500 / Manufacturer: Varian / Model![]() |
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Processing
NMR software |
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Refinement | Method: ![]() ![]() | ||||||||||||||||||||||||||||||
NMR constraints | NOE constraints total: 542 / NOE intraresidue total count: 257 / NOE long range total count: 102 / NOE medium range total count: 39 / NOE sequential total count: 144 | ||||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 |