登録情報 | データベース: PDB / ID: 2lo6 |
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タイトル | Structure of Nrd1 CID bound to phosphorylated RNAP II CTD |
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要素 | - DNA-directed RNA polymerase II subunit RPB1ポリメラーゼ
- Protein NRD1
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キーワード | TRANSCRIPTION (転写 (生物学)) / CTD-interacting domain / CID / carboxy-terminal domain (C末端) / CTD / RNA-processing / transciption termination / cis-trans isomerization of prolines / Ess1 isomerase / PEPTIDE BINDING PROTEIN |
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機能・相同性 | 機能・相同性情報
transcription regulatory region RNA binding / antisense RNA transcript catabolic process / Nrd1 complex / sno(s)RNA 3'-end processing / termination of RNA polymerase II transcription, exosome-dependent / snRNA 3'-end processing / tRNA 3'-end processing / CUT catabolic process / : / nuclear mRNA surveillance ...transcription regulatory region RNA binding / antisense RNA transcript catabolic process / Nrd1 complex / sno(s)RNA 3'-end processing / termination of RNA polymerase II transcription, exosome-dependent / snRNA 3'-end processing / tRNA 3'-end processing / CUT catabolic process / : / nuclear mRNA surveillance / mRNA 3'-end processing / Processing of Capped Intron-Containing Pre-mRNA / RNA Pol II CTD phosphorylation and interaction with CE / Formation of the Early Elongation Complex / mRNA Capping / Formation of TC-NER Pre-Incision Complex / RNA polymerase II transcribes snRNA genes / TP53 Regulates Transcription of DNA Repair Genes / Estrogen-dependent gene expression / RNA Polymerase II Promoter Escape / RNA Polymerase II Transcription Pre-Initiation And Promoter Opening / RNA Polymerase II Transcription Initiation / RNA Polymerase II Transcription Initiation And Promoter Clearance / RNA-templated transcription / RNA Polymerase II Pre-transcription Events / Dual incision in TC-NER / Gap-filling DNA repair synthesis and ligation in TC-NER / RNA polymerase II activity / DNA修復 / RNA polymerase II, core complex / transcription elongation by RNA polymerase II / transcription initiation at RNA polymerase II promoter / ポリメラーゼ / cytoplasmic stress granule / transcription by RNA polymerase II / protein domain specific binding / mRNA binding / ミトコンドリア / DNA binding / RNA binding / metal ion binding / 細胞核類似検索 - 分子機能 : / Nrd1/Seb1, domain 2 / Nrd1/Seb1, RNA recognition motif / CID domain / RPR / CID domain / CID domain profile. / Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat - #90 / ENTH/VHS / RNA polymerase II, heptapeptide repeat, eukaryotic ...: / Nrd1/Seb1, domain 2 / Nrd1/Seb1, RNA recognition motif / CID domain / RPR / CID domain / CID domain profile. / Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat - #90 / ENTH/VHS / RNA polymerase II, heptapeptide repeat, eukaryotic / RNA polymerase Rpb1, domain 6 / RNA polymerase Rpb1, domain 6 / RNA polymerase Rpb1 C-terminal repeat / Eukaryotic RNA polymerase II heptapeptide repeat. / RNA polymerase Rpb1, domain 7 / RNA polymerase Rpb1, domain 7 superfamily / RNA polymerase Rpb1, domain 7 / RNA認識モチーフ / RNA認識モチーフ / Eukaryotic RNA Recognition Motif (RRM) profile. / RNA recognition motif domain / RNA polymerase Rpb1, domain 3 superfamily / RNA polymerase Rpb1, clamp domain superfamily / DNA-directed RNA polymerase, subunit beta-prime / RNA polymerase Rpb1, domain 3 / RNA polymerase Rpb1, domain 3 / RNA polymerase Rpb1, domain 1 / RNA polymerase Rpb1, domain 1 / RNA polymerase, alpha subunit / RNA polymerase Rpb1, domain 4 / RNA polymerase Rpb1, domain 2 / RNA polymerase Rpb1, domain 4 / RNA polymerase, N-terminal / RNA polymerase Rpb1, funnel domain superfamily / RNA polymerase I subunit A N-terminus / RNA polymerase Rpb1, domain 5 / RNA polymerase Rpb1, domain 5 / RNA-binding domain superfamily / Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat / Αソレノイド / Nucleotide-binding alpha-beta plait domain superfamily / Mainly Alpha類似検索 - ドメイン・相同性 DNA-directed RNA polymerase II subunit RPB1 / Protein NRD1類似検索 - 構成要素 |
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生物種 | Saccharomyces cerevisiae S288c (パン酵母) |
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手法 | 溶液NMR / torsion angle dynamics, simulated annealing |
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Model details | lowest energy, model 1 |
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データ登録者 | Kubicek, K. / Cerna, H. / Pasulka, J. / Holub, P. / Hrossova, D. / Loehr, F. / Hofr, C. / Vanacova, S. / Stefl, R. |
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引用 | ジャーナル: Genes Dev. / 年: 2012 タイトル: Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1. 著者: Kubicek, K. / Cerna, H. / Holub, P. / Pasulka, J. / Hrossova, D. / Loehr, F. / Hofr, C. / Vanacova, S. / Stefl, R. |
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履歴 | 登録 | 2012年1月17日 | 登録サイト: BMRB / 処理サイト: RCSB |
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改定 1.0 | 2012年12月26日 | Provider: repository / タイプ: Initial release |
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