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Yorodumi- PDB-2lj9: Partial 3d structure of the c-terminal part of the free arabidops... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2lj9 | ||||||
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Title | Partial 3d structure of the c-terminal part of the free arabidopsis thaliana cp12-2 in its oxidized form | ||||||
Components | CP12 domain-containing protein 2 | ||||||
Keywords | PROTEIN BINDING / HELIX / Intrinsically disordered protein | ||||||
Function / homology | Function and homology information peptide cross-linking via L-cystine / negative regulation of reductive pentose-phosphate cycle / supramolecular complex / cellular response to anoxia / response to sucrose / reductive pentose-phosphate cycle / cellular response to cold / chloroplast stroma / nickel cation binding / response to light stimulus ...peptide cross-linking via L-cystine / negative regulation of reductive pentose-phosphate cycle / supramolecular complex / cellular response to anoxia / response to sucrose / reductive pentose-phosphate cycle / cellular response to cold / chloroplast stroma / nickel cation binding / response to light stimulus / chloroplast / protein-macromolecule adaptor activity / cellular response to heat / protein-containing complex assembly / copper ion binding / protein-containing complex binding / enzyme binding / protein-containing complex / cytosol Similarity search - Function | ||||||
Biological species | Arabidopsis thaliana (thale cress) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Model details | lowest energy, model 1 | ||||||
Authors | Trivelli, X. / Sparla, F. / Marri, L. / Trost, P. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 2012 Title: Conformational Selection and Folding-upon-binding of Intrinsically Disordered Protein CP12 Regulate Photosynthetic Enzymes Assembly. Authors: Fermani, S. / Trivelli, X. / Sparla, F. / Thumiger, A. / Calvaresi, M. / Marri, L. / Falini, G. / Zerbetto, F. / Trost, P. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2lj9.cif.gz | 115.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2lj9.ent.gz | 87 KB | Display | PDB format |
PDBx/mmJSON format | 2lj9.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lj/2lj9 ftp://data.pdbj.org/pub/pdb/validation_reports/lj/2lj9 | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 10643.457 Da / Num. of mol.: 1 / Fragment: UNP residues 54-131 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Arabidopsis thaliana (thale cress) / Gene: At3g62410, CP12-2, T12C14_110 / Production host: Escherichia coli (E. coli) / Strain (production host): BL21(DE3) / References: UniProt: Q9LZP9 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: STRUCTURE DETERMINED WITH HOMONUCLEAR NOES AND TALOS- DERIVED BACKBONE ANGLES |
-Sample preparation
Details |
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Sample |
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Sample conditions | pH: 7 / Pressure: atm / Temperature: 293 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||||||||||||||||||||||
NMR constraints | NOE constraints total: 189 / NOE intraresidue total count: 75 / NOE long range total count: 2 / NOE medium range total count: 37 / NOE sequential total count: 75 / Hydrogen bond constraints total count: 2 / Protein chi angle constraints total count: 0 / Protein other angle constraints total count: 0 / Protein phi angle constraints total count: 17 / Protein psi angle constraints total count: 17 | ||||||||||||||||||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 150 / Conformers submitted total number: 20 | ||||||||||||||||||||||||||||||||||||||||
NMR ensemble rms | Distance rms dev: 0.1097 Å / Distance rms dev error: 0.0118 Å |