+データを開く
-基本情報
登録情報 | データベース: PDB / ID: 2ko2 | ||||||
---|---|---|---|---|---|---|---|
タイトル | NOGO66 | ||||||
要素 | Reticulon-4 | ||||||
キーワード | MEMBRANE PROTEIN (膜タンパク質) / NOGO / peripheral (周辺機器) / DPC micelle / myelin inhibitor / Endoplasmic reticulum (小胞体) / Membrane (生体膜) / Phosphoprotein / Transmembrane (膜貫通型タンパク質) | ||||||
機能・相同性 | 機能・相同性情報 cell adhesion involved in sprouting angiogenesis / positive regulation of ERBB3 signaling pathway / endoplasmic reticulum tubular network formation / endoplasmic reticulum tubular network organization / positive regulation of artery morphogenesis / cerebral cortex radial glia-guided migration / regulation of nervous system development / positive regulation of neutrophil migration / negative regulation of neuron projection regeneration / endoplasmic reticulum tubular network membrane organization ...cell adhesion involved in sprouting angiogenesis / positive regulation of ERBB3 signaling pathway / endoplasmic reticulum tubular network formation / endoplasmic reticulum tubular network organization / positive regulation of artery morphogenesis / cerebral cortex radial glia-guided migration / regulation of nervous system development / positive regulation of neutrophil migration / negative regulation of neuron projection regeneration / endoplasmic reticulum tubular network membrane organization / Axonal growth inhibition (RHOA activation) / endoplasmic reticulum tubular network membrane / negative regulation of vasculogenesis / : / positive regulation of glial cell differentiation / positive regulation of macrophage migration / : / cell migration involved in vasculogenesis / positive regulation of protein localization to endoplasmic reticulum / intracellular sphingolipid homeostasis / endoplasmic reticulum tubular network / regulation of branching morphogenesis of a nerve / central nervous system vasculogenesis / positive regulation of toll-like receptor 9 signaling pathway / negative regulation of axonogenesis / positive regulation of mammary gland epithelial cell proliferation / nuclear pore complex assembly / regulation of sensory perception of pain / protein localization to lysosome / cardiac epithelial to mesenchymal transition / negative regulation of axon extension / positive regulation of dopamine secretion / leukocyte migration involved in inflammatory response / blastocyst formation / endoplasmic reticulum organization / positive regulation of hepatocyte proliferation / axonal fasciculation / positive regulation of macrophage cytokine production / positive regulation of epithelial cell migration / positive regulation of Rac protein signal transduction / negative regulation of amyloid-beta formation / negative regulation of neuron differentiation / regulation of cell migration / cell projection / negative regulation of cell growth / positive regulation of angiogenesis / 細胞結合 / 髄鞘 / negative regulation of neuron projection development / 核膜 / nervous system development / cellular response to hypoxia / postsynaptic density / positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / protein stabilization / neuron projection / cadherin binding / neuronal cell body / glutamatergic synapse / ubiquitin protein ligase binding / protein-containing complex binding / endoplasmic reticulum membrane / 小胞体 / protein homodimerization activity / protein-containing complex / 細胞膜 / 細胞質 類似検索 - 分子機能 | ||||||
生物種 | Mus musculus (ハツカネズミ) | ||||||
手法 | 溶液NMR / simulated annealing | ||||||
Model details | lowest energy, model 1 | ||||||
データ登録者 | Cocco, M.J. / Schulz, J. / Vasudevan, S.V. | ||||||
引用 | ジャーナル: Proc.Natl.Acad.Sci.USA / 年: 2010 タイトル: Protein folding at the membrane interface, the structure of Nogo-66 requires interactions with a phosphocholine surface. 著者: Vasudevan, S.V. / Schulz, J. / Zhou, C. / Cocco, M.J. | ||||||
履歴 |
|
-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
---|
-ダウンロードとリンク
-ダウンロード
PDBx/mmCIF形式 | 2ko2.cif.gz | 218.1 KB | 表示 | PDBx/mmCIF形式 |
---|---|---|---|---|
PDB形式 | pdb2ko2.ent.gz | 179.6 KB | 表示 | PDB形式 |
PDBx/mmJSON形式 | 2ko2.json.gz | ツリー表示 | PDBx/mmJSON形式 | |
その他 | その他のダウンロード |
-検証レポート
アーカイブディレクトリ | https://data.pdbj.org/pub/pdb/validation_reports/ko/2ko2 ftp://data.pdbj.org/pub/pdb/validation_reports/ko/2ko2 | HTTPS FTP |
---|
-関連構造データ
-リンク
-集合体
登録構造単位 |
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR アンサンブル |
|
-要素
#1: タンパク質 | 分子量: 9144.463 Da / 分子数: 1 / 断片: Extracellular domain (UNP residues 1025-1090) / 由来タイプ: 組換発現 / 由来: (組換発現) Mus musculus (ハツカネズミ) / 遺伝子: Kiaa0886, Nogo, Rtn4 / 発現宿主: ESCHERICHIA COLI (大腸菌) / 株 (発現宿主): BL21 / 参照: UniProt: Q99P72 |
---|
-実験情報
-実験
実験 | 手法: 溶液NMR | ||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR実験 |
|
-試料調製
詳細 |
| ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
試料 |
| ||||||||||||||||
試料状態 | イオン強度: 0.0 / pH: 4.0 / 圧: AMBIENT / 温度: 308 K |
-NMR測定
NMRスペクトロメーター | タイプ: VARIAN INOVA / 製造業者: Varian / モデル: INOVA / 磁場強度: 800 MHz |
---|
-解析
NMR software |
| ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
精密化 | 手法: simulated annealing / ソフトェア番号: 1 詳細: XPLOR-NIH WAS USED FOR REFINING THE FOLDED PROTEINS. DIHERAL ANGLE RESTRAINTS AND PRE RESTRAINTS WERE ADDED DURING REFINEMENT. | ||||||||||||||||||||
代表構造 | 選択基準: lowest energy | ||||||||||||||||||||
NMRアンサンブル | コンフォーマー選択の基準: structures with the lowest energy 計算したコンフォーマーの数: 20 / 登録したコンフォーマーの数: 10 |