+Open data
-Basic information
Entry | Database: PDB / ID: 2jax | ||||||
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Title | Universal Stress Protein Rv2623 from Mycobaterium Tuberculosis | ||||||
Components | HYPOTHETICAL PROTEIN TB31.7Hypothesis | ||||||
Keywords | PROTEIN BINDING / USP / UNIVERSAL STRESS PROTEIN / ATP BINDING | ||||||
Function / homology | Function and homology information dormancy entry of symbiont in host / regulation of growth / peptidoglycan-based cell wall / response to hypoxia / ATP binding / plasma membrane / cytosol Similarity search - Function | ||||||
Biological species | MYCOBACTERIUM TUBERCULOSIS (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution: 3.22 Å | ||||||
Authors | Oberschall, A. / Bourenkov, G. / Strizhov, N. / Bartunik, H.D. | ||||||
Citation | Journal: To be Published Title: Crystal Structure of Universal Stress Protein Rv2623 from Mycobacterium Tuberculosis Authors: Oberschall, A. / Bourenkov, G. / Strizhov, N. / Bartunik, H.D. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2jax.cif.gz | 60.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2jax.ent.gz | 49.4 KB | Display | PDB format |
PDBx/mmJSON format | 2jax.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ja/2jax ftp://data.pdbj.org/pub/pdb/validation_reports/ja/2jax | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 33037.578 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) MYCOBACTERIUM TUBERCULOSIS (bacteria) / Strain: H37RV / Plasmid: PET24B / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): ROSETTA2 / References: UniProt: O06189, UniProt: P9WFD7*PLUS | ||
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#2: Chemical | #3: Chemical | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 3.5 Å3/Da / Density % sol: 64 % / Description: NONE |
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Crystal grow | pH: 4.6 / Details: 0.2M CACL2 0.1M NAACT PH4.6 20% ISOPROPANOL |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: MPG/DESY, HAMBURG / Beamline: BW6 / Wavelength: 0.9791 |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Sep 7, 2005 / Details: MIRRORS |
Radiation | Monochromator: SI111 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9791 Å / Relative weight: 1 |
Reflection | Resolution: 3.22→20 Å / Num. obs: 8342 / % possible obs: 99.2 % / Observed criterion σ(I): 0 / Redundancy: 11.6 % / Rmerge(I) obs: 0.13 / Net I/σ(I): 23 |
Reflection shell | Resolution: 3.22→3.32 Å / Redundancy: 11.6 % / Rmerge(I) obs: 0.34 / Mean I/σ(I) obs: 6 / % possible all: 98.7 |
-Processing
Software |
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Refinement | Method to determine structure: SAD Starting model: NONE Resolution: 3.22→88.39 Å / Cor.coef. Fo:Fc: 0.878 / Cor.coef. Fo:Fc free: 0.818 / Cross valid method: THROUGHOUT / ESU R Free: 0.536 Stereochemistry target values: MAXIMUM LIKELIHOOD WITH PHASES Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 63 Å2
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Refinement step | Cycle: LAST / Resolution: 3.22→88.39 Å
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Refine LS restraints |
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