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- PDB-2hhj: Human bisphosphoglycerate mutase complexed with 2,3-bisphosphogly... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2hhj | ||||||
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Title | Human bisphosphoglycerate mutase complexed with 2,3-bisphosphoglycerate (15 days) | ||||||
![]() | Bisphosphoglycerate mutase![]() | ||||||
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Function / homology | ![]() carbohydrate derivative catabolic process / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Wang, Y. / Gong, W. | ||||||
![]() | ![]() Title: Seeing the process of histidine phosphorylation in human bisphosphoglycerate mutase. Authors: Wang, Y. / Liu, L. / Wei, Z. / Cheng, Z. / Lin, Y. / Gong, W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 130.3 KB | Display | ![]() |
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PDB format | ![]() | 106.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 31197.344 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() References: UniProt: P07738, ![]() ![]() ![]() #2: Chemical | ChemComp-HAI / | ![]() #3: Chemical | ![]() #4: Chemical | ![]() #5: Water | ChemComp-HOH / | ![]() Nonpolymer details | (DG2, NEP) (DG2, 3PG) ARE PARTIALLY IN ALTERNATE CONFORMATI | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2 Å3/Da / Density % sol: 37.97 % |
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Crystal grow![]() | Temperature: 289 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: PEG6000, TEMPERATURE 289K, pH 7.50, VAPOR DIFFUSION, HANGING DROP |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Feb 19, 2005 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.5→30 Å / Num. all: 88158 / Num. obs: 88158 / % possible obs: 97.8 % / Observed criterion σ(I): 0 / Redundancy: 4.5 % / Biso Wilson estimate: 15.9 Å2 / Rmerge(I) obs: 0.069 / Net I/σ(I): 19.6 |
Reflection shell | Resolution: 1.5→1.53 Å / Redundancy: 3.3 % / Rmerge(I) obs: 0.438 / Mean I/σ(I) obs: 1.76 / % possible all: 92.3 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 43.32 Å2 / ksol: 0.31 e/Å3 | ||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 18 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.5→28.83 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.5→1.59 Å / Rfactor Rfree error: 0.007 / Total num. of bins used: 6
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Xplor file |
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