+Open data
-Basic information
Entry | Database: PDB / ID: 2gw1 | ||||||
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Title | Crystal Structure of the Yeast Tom70 | ||||||
Components | Mitochondrial precursor proteins import receptor | ||||||
Keywords | PROTEIN TRANSPORT / TPR | ||||||
Function / homology | Function and homology information : / mitochondrion targeting sequence binding / mitochondrial outer membrane translocase complex / protein import into mitochondrial matrix / protein insertion into mitochondrial inner membrane / protein-transporting ATPase activity / protein targeting to mitochondrion / mitochondrial outer membrane / mitochondrion Similarity search - Function | ||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / SAD / Resolution: 3 Å | ||||||
Authors | Wu, Y. / Sha, B. | ||||||
Citation | Journal: Nat.Struct.Mol.Biol. / Year: 2006 Title: Crystal structure of yeast mitochondrial outer membrane translocon member Tom70p. Authors: Wu, Y. / Sha, B. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2gw1.cif.gz | 199.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2gw1.ent.gz | 166.3 KB | Display | PDB format |
PDBx/mmJSON format | 2gw1.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/gw/2gw1 ftp://data.pdbj.org/pub/pdb/validation_reports/gw/2gw1 | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 58810.211 Da / Num. of mol.: 2 / Fragment: cytosolic fragment Source method: isolated from a genetically manipulated source Source: (gene. exp.) Saccharomyces cerevisiae (brewer's yeast) Gene: TOM70, MAS70, OMP1 / Production host: Escherichia coli (E. coli) / References: UniProt: P07213 #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 2 |
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-Sample preparation
Crystal | Density Matthews: 2.6 Å3/Da / Density % sol: 52.77 % |
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 6 Details: 25% PEG 4000, 0.1M ammonium citrate, 0.2M ammonium acetate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 200 K |
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Diffraction source | Source: SYNCHROTRON / Site: APS / Beamline: 22-ID / Wavelength: 1 Å |
Detector | Type: MARMOSAIC 300 mm CCD / Detector: CCD / Date: Mar 20, 2006 |
Radiation | Monochromator: 0.97903 / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 3→50 Å / Num. obs: 25274 / % possible obs: 95 % |
Reflection shell | Resolution: 3→3.12 Å / % possible all: 91.4 |
-Processing
Software |
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Refinement | Method to determine structure: SAD / Resolution: 3→46.17 Å / Rfactor Rfree error: 0.01 / Data cutoff high absF: 946224.81 / Data cutoff high rms absF: 946224.8 / Data cutoff low absF: 0 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 0
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 42.3333 Å2 / ksol: 0.318691 e/Å3 | |||||||||||||||||||||||||
Displacement parameters | Biso mean: 79.9 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 3→46.17 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 3→3.19 Å / Rfactor Rfree error: 0.033 / Total num. of bins used: 6
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Xplor file |
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