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Yorodumi- PDB-2g2k: NMR structure of an N-terminal fragment of the eukaryotic initiat... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2g2k | ||||||
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Title | NMR structure of an N-terminal fragment of the eukaryotic initiation factor 5 (eIF5) | ||||||
Components | Eukaryotic translation initiation factor 5 | ||||||
Keywords | TRANSLATION / eIF5 / eIF125 fold | ||||||
Function / homology | Function and homology information eukaryotic initiation factor eIF2 binding / formation of translation preinitiation complex / formation of cytoplasmic translation initiation complex / GDP-dissociation inhibitor activity / regulation of translational initiation / Ribosomal scanning and start codon recognition / GTP hydrolysis and joining of the 60S ribosomal subunit / translation initiation factor activity / ribosome assembly / GTPase activator activity ...eukaryotic initiation factor eIF2 binding / formation of translation preinitiation complex / formation of cytoplasmic translation initiation complex / GDP-dissociation inhibitor activity / regulation of translational initiation / Ribosomal scanning and start codon recognition / GTP hydrolysis and joining of the 60S ribosomal subunit / translation initiation factor activity / ribosome assembly / GTPase activator activity / cadherin binding / synapse / GTP binding / RNA binding / plasma membrane / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Authors | Conte, M.R. / Kelly, G. / Babon, J. / Sanfelice, D. / Smerdon, S.J. / Proud, C.G. | ||||||
Citation | Journal: Biochemistry / Year: 2006 Title: Structure of the eukaryotic initiation factor (eIF) 5 reveals a fold common to several translation factors Authors: Conte, M.R. / Kelly, G. / Babon, J. / Sanfelice, D. / Youell, J. / Smerdon, S.J. / Proud, C.G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2g2k.cif.gz | 865.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2g2k.ent.gz | 724.5 KB | Display | PDB format |
PDBx/mmJSON format | 2g2k.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/g2/2g2k ftp://data.pdbj.org/pub/pdb/validation_reports/g2/2g2k | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 19274.211 Da / Num. of mol.: 1 / Fragment: N-terminal fragment, residues 1-170 / Mutation: S10M Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Production host: Escherichia coli (E. coli) / References: UniProt: P55010 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 0.6mM U-15N, 13C; 20mM sodium acetate / Solvent system: 90% H2O/10% D2O |
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Sample conditions | Ionic strength: No added salt / pH: 6 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 | ||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 120 / Conformers submitted total number: 18 |