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Yorodumi- PDB-2fbs: Solution structure of the LL-37 core peptide bound to detergent m... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2fbs | ||||||
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Title | Solution structure of the LL-37 core peptide bound to detergent micelles | ||||||
Components | Antibacterial protein FALL-39, core peptideAntibiotic | ||||||
Keywords | ANTIMICROBIAL PROTEIN / AMPHIPATHIC HELIX / LL-37 / host defense peptide / antimicrobial peptide | ||||||
Function / homology | Function and homology information cytolysis / killing by host of symbiont cells / neutrophil activation / specific granule / cellular response to peptidoglycan / cellular response to interleukin-6 / Antimicrobial peptides / cellular response to interleukin-1 / innate immune response in mucosa / cell projection ...cytolysis / killing by host of symbiont cells / neutrophil activation / specific granule / cellular response to peptidoglycan / cellular response to interleukin-6 / Antimicrobial peptides / cellular response to interleukin-1 / innate immune response in mucosa / cell projection / lipopolysaccharide binding / specific granule lumen / positive regulation of angiogenesis / antimicrobial humoral immune response mediated by antimicrobial peptide / tertiary granule lumen / cellular response to tumor necrosis factor / antibacterial humoral response / cellular response to lipopolysaccharide / defense response to Gram-negative bacterium / amyloid fibril formation / defense response to Gram-positive bacterium / defense response to bacterium / positive regulation of protein phosphorylation / innate immune response / positive regulation of cell population proliferation / Neutrophil degranulation / extracellular space / extracellular exosome / extracellular region Similarity search - Function | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Wang, G. / Li, X. | ||||||
Citation | Journal: J.Am.Chem.Soc. / Year: 2006 Title: Solution Structures of Human LL-37 Fragments and NMR-Based Identification of a Minimal Membrane-Targeting Antimicrobial and Anticancer Region Authors: Li, X. / Li, Y. / Han, H. / Miller, D.W. / Wang, G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2fbs.cif.gz | 96 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2fbs.ent.gz | 74.6 KB | Display | PDB format |
PDBx/mmJSON format | 2fbs.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fb/2fbs ftp://data.pdbj.org/pub/pdb/validation_reports/fb/2fbs | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 1722.132 Da / Num. of mol.: 1 / Fragment: residues 150-162 / Source method: obtained synthetically Details: sequence corresponds to residues 150-162 of Human FALL-39 References: UniProt: P49913 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 2 mM peptide, 80 mM Sodium dodecylsulfate / Solvent system: 10%D2O/90%H2O |
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Sample conditions | Ionic strength: 80 / pH: 5.4 / Pressure: 1 atm / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |