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Open data
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Basic information
Entry | Database: PDB / ID: 2fau | ||||||
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Title | Crystal structure of human vps26 | ||||||
![]() | Vacuolar protein sorting 26![]() | ||||||
![]() | ![]() ![]() ![]() | ||||||
Function / homology | ![]() tubular endosome / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Shi, H. / Rojas, R. / Bonifacino, J.S. / Hurley, J.H. | ||||||
![]() | ![]() Title: The retromer subunit Vps26 has an arrestin fold and binds Vps35 through its C-terminal domain. Authors: Shi, H. / Rojas, R. / Bonifacino, J.S. / Hurley, J.H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 71.3 KB | Display | ![]() |
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PDB format | ![]() | 56.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 40010.609 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() |
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#2: Chemical | ChemComp-GOL / ![]() |
#3: Water | ChemComp-HOH / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.47 Å3/Da / Density % sol: 50.24 % |
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Crystal grow![]() | Temperature: 300 K / Method: vapor diffusion, sitting drop / pH: 6.5 Details: 8% PEG 8000 100mM Na cacodylate pH 6.5 15% glycerol 10mM DTT 1mM TmCl3, VAPOR DIFFUSION, SITTING DROP, temperature 300K |
-Data collection
Diffraction |
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Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||||||||||||||
Detector | Type: MARRESEARCH / Detector: CCD / Date: Feb 6, 2005 | ||||||||||||||||||||||||
Radiation |
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Radiation wavelength | Wavelength![]() | ||||||||||||||||||||||||
Reflection | Resolution: 2.09→48.71 Å / Num. all: 22533 / Num. obs: 22533 / % possible obs: 87.9 % / Observed criterion σ(F): -3 / Observed criterion σ(I): -3 / Biso Wilson estimate: 21 Å2 | ||||||||||||||||||||||||
Reflection shell | Resolution: 2.09→2.16 Å / % possible all: 55.4 |
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Processing
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Refinement | Method to determine structure![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 61.0291 Å2 / ksol: 0.342588 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 66.4 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.1→48.71 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.1→2.23 Å / Rfactor Rfree error: 0.025 / Total num. of bins used: 6
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Xplor file |
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