+Open data
-Basic information
Entry | Database: PDB / ID: 2dau | ||||||||||||||||||
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Title | DICKERSON-DREW DNA DODECAMER, NMR, MINIMIZED AVERAGE STRUCTURE | ||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / DEOXYRIBONUCLEIC ACID / DODECAMER / MINIMIZED AVERAGE STRUCTURE | Function / homology | DNA / DNA (> 10) | Function and homology information Method | SOLUTION NMR / RESTRAINED MD | Authors | Denisov, A. / Bekiroglu, S. / Maltseva, T. / Sandstrom, A. / Altmann, K.-H. / Egli, M. / Chattopadhyaya, J. | Citation | Journal: J.Biomol.Struct.Dyn. / Year: 1998 | Title: The solution conformation of a carbocyclic analog of the Dickerson-Drew dodecamer: comparison with its own X-ray structure and that of the NMR structure of the native counterpart. Authors: Denisov, A.Y. / Zamaratski, E.V. / Maltseva, T.V. / Sandstrom, A. / Bekiroglu, S. / Altmann, K.H. / Egli, M. / Chattopadhyaya, J. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2dau.cif.gz | 23.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2dau.ent.gz | 15.3 KB | Display | PDB format |
PDBx/mmJSON format | 2dau.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/da/2dau ftp://data.pdbj.org/pub/pdb/validation_reports/da/2dau | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 3663.392 Da / Num. of mol.: 2 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Sample conditions | pH: 7.0 / Temperature: 293 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker DRX 500 / Manufacturer: Bruker / Model: DRX 500 / Field strength: 500 MHz |
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-Processing
Software | Name: AMBER / Classification: refinement | ||||||||||||||||||||
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NMR software |
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Refinement | Method: RESTRAINED MD / Software ordinal: 1 / Details: REFINEMENT DETAILS CAN BE FOUND IN THE PAPER. | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: LOWEST ENERGY, BEST AGREEMENT WITH NOE VOLUMES Conformers calculated total number: 9 / Conformers submitted total number: 1 |