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Open data
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Basic information
Entry | Database: PDB / ID: 2cth | |||||||||
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Title | CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS HILDENBOROUGH | |||||||||
![]() | CYTOCHROME C3 | |||||||||
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Function / homology | ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Simoes, P. / Matias, P.M. / Morais, J. / Wilson, K. / Dauter, Z. / Carrondo, M.A. | |||||||||
![]() | Journal: Inorg.Chim.Acta. / Year: 1998 Title: Refinement of the Three-Dimensional Structures of Cytochromes C3 from Desulfovibrio Vulgaris Hildenborough at 1.67 Angstrom Resolution and from Desulfovibrio Desulfuricans Atcc 27774 at 1.6 Angstrom Resolution Authors: Simoes, P. / Matias, P.M. / Morais, J. / Wilson, K. / Dauter, Z. / Carrondo, M.A. #1: ![]() Title: Structure Analysis of Cytochrome C3 from Desulfovibrio Vulgaris Hildenborough at 1.9 A Resolution Authors: Matias, P.M. / Frazao, C. / Morais, J. / Coll, M. / Carrondo, M.A. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 62.1 KB | Display | ![]() |
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PDB format | ![]() | 50.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 2cdvS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 11687.463 Da / Num. of mol.: 2 / Source method: isolated from a natural source Source: (natural) ![]() ![]() Species: Desulfovibrio vulgaris ![]() #2: Chemical | ChemComp-HEM / ![]() #3: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.84 Å3/Da / Density % sol: 56.75 % |
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Crystal grow![]() | pH: 5.5 Details: PROTEIN WAS CRYSTALLIZED FROM 75% (V/V) ETHANOL AND 0.05 M SODIUM ACETATE (PH 5.5) |
-Data collection
Diffraction | Mean temperature: 295 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Nov 1, 1993 / Details: MIRROR |
Radiation | Monochromator: SI(111) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.67→25.3 Å / Num. obs: 28861 / % possible obs: 94.3 % / Observed criterion σ(I): 0 / Redundancy: 8.1 % / Rmerge(I) obs: 0.079 / Rsym value: 0.079 / Net I/σ(I): 8.1 |
Reflection shell | Resolution: 1.67→1.71 Å / Redundancy: 4 % / Rmerge(I) obs: 0.265 / Mean I/σ(I) obs: 2.8 / Rsym value: 0.265 / % possible all: 89.6 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: PDB ENTRY 2CDV Resolution: 1.67→8 Å / Num. parameters: 8266 / Num. restraintsaints: 30043 / Cross valid method: FREE R-VALUE / σ(F): 1
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Refinement step | Cycle: LAST / Resolution: 1.67→8 Å
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Refine LS restraints |
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