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Yorodumi- PDB-2cdh: ARCHITECTURE OF THE THERMOMYCES LANUGINOSUS FUNGAL FATTY ACID SYN... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2cdh | ||||||
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Title | ARCHITECTURE OF THE THERMOMYCES LANUGINOSUS FUNGAL FATTY ACID SYNTHASE AT 5 ANGSTROM RESOLUTION. | ||||||
Components |
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Keywords | TRANSFERASE / FATTY ACID SYNTHESIS / MULTIFUNCTIONAL ENZYME / FUNGAL FATTY ACID SYNTHASE | ||||||
Function / homology | Function and homology information monounsaturated fatty acid biosynthetic process / beta-ketoacyl-[acyl-carrier-protein] synthase I / 3-oxoacyl-[acyl-carrier-protein] reductase / 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity / 3-oxoacyl-[acyl-carrier-protein] synthase activity / chloroplast / fatty acid biosynthetic process / NAD binding / cytosol Similarity search - Function | ||||||
Biological species | THERMOMYCES LANUGINOSUS (fungus) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 4.2 Å | ||||||
Model type details | CA ATOMS ONLY, CHAIN 0, 1, 2, 3, Y, Z, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, ...CA ATOMS ONLY, CHAIN 0, 1, 2, 3, Y, Z, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X | ||||||
Authors | Jenni, S. / Leibundgut, M. / Maier, T. / Ban, N. | ||||||
Citation | Journal: Science / Year: 2006 Title: Architecture of a Fungal Fatty Acid Synthase at 5 A Resolution. Authors: Jenni, S. / Leibundgut, M. / Maier, T. / Ban, N. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2cdh.cif.gz | 293.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2cdh.ent.gz | 218 KB | Display | PDB format |
PDBx/mmJSON format | 2cdh.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cd/2cdh ftp://data.pdbj.org/pub/pdb/validation_reports/cd/2cdh | HTTPS FTP |
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-Related structure data
Related structure data | 1dd8S 1edoS 1goxS 1nm2S 1s9cS S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 24088.078 Da / Num. of mol.: 6 / Source method: isolated from a natural source / Details: DSMZ10635 / Source: (natural) THERMOMYCES LANUGINOSUS (fungus) #2: Protein | Mass: 31119.555 Da / Num. of mol.: 12 / Source method: isolated from a natural source / Details: DSMZ10635 / Source: (natural) THERMOMYCES LANUGINOSUS (fungus) #3: Protein | Mass: 42684.254 Da / Num. of mol.: 6 / Source method: isolated from a natural source / Details: DSMZ10635 / Source: (natural) THERMOMYCES LANUGINOSUS (fungus) / References: UniProt: P0A953*PLUS #4: Protein | Mass: 25359.418 Da / Num. of mol.: 6 / Source method: isolated from a natural source / Details: DSMZ10635 / Source: (natural) THERMOMYCES LANUGINOSUS (fungus) / References: UniProt: Q93X62*PLUS #5: Protein | Mass: 27619.830 Da / Num. of mol.: 6 / Source method: isolated from a natural source / Details: DSMZ10635 / Source: (natural) THERMOMYCES LANUGINOSUS (fungus) Sequence details | THE CA ATOMS OF PDB ENTRIES 1S9C, 1EDO, 1GOX AND 1NM2 WERE FITTED AS RIGID BODIES INTO ELECTRON DENSITY. | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density % sol: 66 % Description: CA ATOMS OF PDB ENTRIES 1S9C, 1DD8, 1EDO, 1GOX, 1NM2 WERE FITTED AS RIGID BODIES INTO THE ELECTRON DENSITY |
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: SLS / Beamline: X06SA / Wavelength: 1 |
Detector | Type: MARRESEARCH / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 4.2→500 Å / Num. obs: 261067 / % possible obs: 98 % / Redundancy: 3.5 % / Rmerge(I) obs: 0.15 / Net I/σ(I): 6.6 |
Reflection shell | Resolution: 4.2→4.5 Å / Rmerge(I) obs: 0.61 / Mean I/σ(I) obs: 2.2 / % possible all: 97.5 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: PDB ENTRIES 1S9C, 1DD8, 1EDO, 1GOX AND 1NM2 Resolution: 4.2→500 Å / Num. reflection obs: 261067 | ||||||||||||
Refinement step | Cycle: LAST / Resolution: 4.2→500 Å
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