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- PDB-2bwg: Structure of human guanosine monophosphate reductase GMPR1 in com... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2bwg | ||||||
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Title | Structure of human guanosine monophosphate reductase GMPR1 in complex with GMP | ||||||
![]() | GMP REDUCTASE I![]() | ||||||
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Function / homology | ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Bunkoczi, G. / Haroniti, A. / Ng, S. / von Delft, F. / Gileadi, O. / Oppermann, U. / Arrowsmith, C. / Edwards, A. / Sundstrom, M. | ||||||
![]() | ![]() Title: Structure of Human Guanosine Monophosphate Reductase Gmpr1 in Complex with Gmp Authors: Bunkoczi, G. / Haroniti, A. / Ng, S. / von Delft, F. / Gileadi, O. / Oppermann, U. / Arrowsmith, C. / Edwards, A. / Sundstrom, M. | ||||||
History |
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Remark 700 | SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AC BB" IN EACH CHAIN ON SHEET RECORDS ... SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AC BB" IN EACH CHAIN ON SHEET RECORDS BELOW ARE ACTUALLY 9-STRANDED BARRELS REPRESENTED BY 10-STRANDED SHEETS IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. THE SHEETS PRESENTED AS "CB DA" IN EACH CHAIN ON SHEET RECORDS BELOW ARE ACTUALLY 8-STRANDED BARRELS REPRESENTED BY 9-STRANDED SHEETS IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 263.9 KB | Display | ![]() |
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PDB format | ![]() | 209.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 2bleC ![]() 1eepS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
NCS oper:
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Components
#1: Protein | ![]() Mass: 39991.539 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-K / #3: Chemical | ChemComp-5GP / ![]() #4: Water | ChemComp-HOH / | ![]() Sequence details | RESIDUES 1-22 CONSTITUTE A HIS-TAG THE SEQUENCE VARIANT AT RESIDUE 256 IS DESCRIBED BY THE UNIPROT ...RESIDUES 1-22 CONSTITUTE | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.2 Å3/Da / Density % sol: 42.4 % |
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Crystal grow![]() | Details: 16% PEG3350 0.30 M K3CIT |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU IMAGE PLATE / Detector: IMAGE PLATE / Date: Jan 31, 2005 |
Radiation | Monochromator: OSMIC HR MULTILAYER OPTICS / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.4→19.9 Å / Num. obs: 154258 / % possible obs: 90.1 % / Observed criterion σ(I): 0 / Redundancy: 2.83 % / Rmerge(I) obs: 0.12 / Net I/σ(I): 7.14 |
Reflection shell | Resolution: 2.4→2.5 Å / Redundancy: 2.27 % / Rmerge(I) obs: 0.37 / Mean I/σ(I) obs: 2 / % possible all: 80.8 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: PDB ENTRY 1EEP Resolution: 2.4→40 Å / Cor.coef. Fo:Fc: 0.941 / Cor.coef. Fo:Fc free: 0.914 / SU B: 18.356 / SU ML: 0.222 / TLS residual ADP flag: UNVERIFIED / Cross valid method: THROUGHOUT / ESU R: 0.65 / ESU R Free: 0.29 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 19.81 Å2
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Refinement step | Cycle: LAST / Resolution: 2.4→40 Å
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Refine LS restraints |
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