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Yorodumi- PDB-2ayu: The structure of nucleosome assembly protein suggests a mechanism... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2ayu | ||||||
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Title | The structure of nucleosome assembly protein suggests a mechanism for histone binding and shuttling | ||||||
Components | Nucleosome assembly protein | ||||||
Keywords | CHAPERONE / Nucleosome assembly protein 1 (NAP1) / Histone chaperone | ||||||
Function / homology | Function and homology information protein localization to cell division site after cytokinesis / Gin4 complex / cellular bud neck septin collar / budding cell bud growth / : / septin ring assembly / septum digestion after cytokinesis / nucleosome disassembly / NLS-bearing protein import into nucleus / cell division site ...protein localization to cell division site after cytokinesis / Gin4 complex / cellular bud neck septin collar / budding cell bud growth / : / septin ring assembly / septum digestion after cytokinesis / nucleosome disassembly / NLS-bearing protein import into nucleus / cell division site / enzyme activator activity / positive regulation of microtubule polymerization / cyclin binding / positive regulation of transcription elongation by RNA polymerase II / ribosomal small subunit biogenesis / nucleosome assembly / unfolded protein binding / histone binding / chromatin binding / chromatin / DNA binding / identical protein binding / nucleus / cytoplasm Similarity search - Function | ||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 3 Å | ||||||
Authors | Park, Y.J. / Luger, K. | ||||||
Citation | Journal: Proc.Natl.Acad.Sci.Usa / Year: 2006 Title: The structure of nucleosome assembly protein 1. Authors: Park, Y.J. / Luger, K. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2ayu.cif.gz | 60.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2ayu.ent.gz | 46.8 KB | Display | PDB format |
PDBx/mmJSON format | 2ayu.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ay/2ayu ftp://data.pdbj.org/pub/pdb/validation_reports/ay/2ayu | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 47930.383 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Saccharomyces cerevisiae (brewer's yeast) Gene: NAP1 / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21DE3 / References: UniProt: P25293 |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 3.45 Å3/Da / Density % sol: 64.35 % |
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Crystal grow | Temperature: 292 K / Method: vapor diffusion, sitting drop / pH: 4.5 Details: mono-ammonium dihydrogen phosphate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 292K |
-Data collection
Diffraction |
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Radiation |
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Reflection | Resolution: 3→50 Å |
-Processing
Software |
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Refinement | Method to determine structure: MAD / Resolution: 3→50 Å / Rfactor Rfree: 0.28 / Rfactor Rwork: 0.25 / σ(F): 0 / σ(I): 0 | |||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3→50 Å
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Refine LS restraints |
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