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Open data
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Basic information
Entry | Database: PDB / ID: 1zb1 | ||||||
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Title | Structure basis for endosomal targeting by the Bro1 domain | ||||||
![]() | BRO1 protein | ||||||
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Function / homology | ![]() positive regulation of ubiquitin-specific protease activity / intralumenal vesicle formation / ATP export / mitochondria-associated ubiquitin-dependent protein catabolic process / protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / protein localization to endosome / vacuolar transport / deubiquitinase activator activity / protein deubiquitination / response to nutrient ...positive regulation of ubiquitin-specific protease activity / intralumenal vesicle formation / ATP export / mitochondria-associated ubiquitin-dependent protein catabolic process / protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway / protein localization to endosome / vacuolar transport / deubiquitinase activator activity / protein deubiquitination / response to nutrient / ubiquitin-dependent protein catabolic process / endosome membrane / ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Kim, J. / Sitaraman, S. / Hierro, A. / Beach, B.M. / Odorizzi, G. / Hurley, J.H. | ||||||
![]() | ![]() Title: Structural basis for endosomal targeting by the Bro1 domain. Authors: Kim, J. / Sitaraman, S. / Hierro, A. / Beach, B.M. / Odorizzi, G. / Hurley, J.H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 166.2 KB | Display | ![]() |
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PDB format | ![]() | 132.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 45607.578 Da / Num. of mol.: 2 / Fragment: Bro1 domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() Plasmid: pGST-parallel2 / Production host: ![]() ![]() ![]() #2: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.16 Å3/Da / Density % sol: 61.03 % |
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Crystal grow![]() | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 8.3 Details: PEG 3350, tri-potassium citrate, pH 8.3, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K |
-Data collection
Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||
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Radiation | Monochromator: Si 111 CHANNEL / Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 1.95→40.3 Å / Num. all: 72861 / Num. obs: 77077 | ||||||||||||
Reflection shell | Resolution: 1.95→2.02 Å / % possible all: 95.3 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Refine analyze | Luzzati coordinate error obs: 0.26 Å / Luzzati d res low obs: 5 Å / Luzzati sigma a obs: 0.16 Å | ||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.95→40.26 Å
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Refine LS restraints |
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