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- PDB-1ytc: THERMODYNAMIC CYCLES AS PROBES OF STRUCTURE-FUNCTION RELATIONSHIP... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1ytc | |||||||||
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Title | THERMODYNAMIC CYCLES AS PROBES OF STRUCTURE-FUNCTION RELATIONSHIPS IN UNFOLDED PROTEINS | |||||||||
![]() | YEAST ISO-2 CYTOCHROME C | |||||||||
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Function / homology | ![]() Release of apoptotic factors from the mitochondria / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | |||||||||
Biological species | ![]() ![]() ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Luo, Y. / Brayer, G.D. | |||||||||
![]() | ![]() Title: Thermodynamic cycles as probes of structure in unfolded proteins. Authors: McGee, W.A. / Rosell, F.I. / Liggins, J.R. / Rodriguez-Ghidarpour, S. / Luo, Y. / Chen, J. / Brayer, G.D. / Mauk, A.G. / Nall, B.T. #1: ![]() Title: The Structure and Function of Omega Loop a Replacements in Cytochrome C Authors: Murphy, M.E.P. / Fetrow, J.S. / Burton, R.E. / Brayer, G.D. #2: ![]() Title: Structure Determination and Analysis of Yeast Iso-2-Cytochrome C and a Composite Mutant Protein Authors: Murphy, M.E.P. / Nall, B.T. / Brayer, G.D. | |||||||||
History |
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Remark 700 | SHEET THE PDB HAS GENERATED THE HELIX AND SHEET RECORDS FROM THE COORDINATES USING A PROGRAM BASED ...SHEET THE PDB HAS GENERATED THE HELIX AND SHEET RECORDS FROM THE COORDINATES USING A PROGRAM BASED ON DSSP OF W. KABSCH AND C. SANDER. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 35.6 KB | Display | ![]() |
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PDB format | ![]() | 26.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 12465.292 Da / Num. of mol.: 1 / Mutation: N52I Source method: isolated from a genetically manipulated source Details: REDUCED STATE OF HEME Source: (gene. exp.) ![]() ![]() ![]() Production host: ![]() ![]() ![]() |
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#2: Chemical | ChemComp-SO4 / ![]() |
#3: Chemical | ChemComp-HEC / ![]() |
#4: Water | ChemComp-HOH / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.88 Å3/Da / Density % sol: 34.5 % | ||||||||||||||||||||||||||||||||||||
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Crystal grow![]() | *PLUS pH: 7 / Method: unknown | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.5418 Å |
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Detector | Type: RIGAKU / Detector: IMAGE PLATE / Date: Mar 24, 1992 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.8→69.5 Å / Num. obs: 9141 / % possible obs: 95.5 % / Observed criterion σ(I): 2 / Redundancy: 6 % / Rmerge(I) obs: 0.06 |
Reflection | *PLUS Lowest resolution: 9999 Å / Num. measured all: 59573 / Rmerge(I) obs: 0.06 |
Reflection shell | *PLUS Highest resolution: 1.8 Å / Lowest resolution: 2 Å / % possible obs: 93.4 % |
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Processing
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Refinement | Resolution: 1.8→8 Å / σ(F): 2
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Displacement parameters | Biso mean: 24 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine analyze | Luzzati coordinate error obs: 0.16 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.8→8 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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