[English] 日本語
![](img/lk-miru.gif)
- PDB-1xlj: MECHANISM FOR ALDOSE-KETOSE INTERCONVERSION BY D-XYLOSE ISOMERASE... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1xlj | ||||||
---|---|---|---|---|---|---|---|
Title | MECHANISM FOR ALDOSE-KETOSE INTERCONVERSION BY D-XYLOSE ISOMERASE INVOLVING RING OPENING FOLLOWED BY A 1,2-HYDRIDE SHIFT | ||||||
![]() | D-XYLOSE ISOMERASE![]() | ||||||
![]() | ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE) | ||||||
Function / homology | ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Collyer, C.A. / Henrick, K. / Blow, D.M. | ||||||
![]() | ![]() Title: Mechanism for aldose-ketose interconversion by D-xylose isomerase involving ring opening followed by a 1,2-hydride shift. Authors: Collyer, C.A. / Henrick, K. / Blow, D.M. #1: ![]() Title: Observations of Reaction Intermediates and the Mechanism of Aldose-Ketose Interconversion by D-Xylose Isomerase Authors: Collyer, C.A. / Blow, D.M. #2: ![]() Title: Comparison of Backbone Structures of Glucose Isomerase from Streptomyces and Arthrobacter Authors: Henrick, K. / Blow, D.M. / Carrell, H.L. / Glusker, J.P. #3: ![]() Title: The Crystallization of Glucose Isomerase from Arthrobacter B3728 Authors: Akins, J. / Brick, P. / Jones, H.B. / Hirayama, N. / Shaw, P.-C. / Blow, D.M. | ||||||
History |
| ||||||
Remark 700 | SHEET THE TWO SHEETS PRESENTED AS *BAA* AND *BAB* ON SHEET RECORDS BELOW ARE ACTUALLY EIGHT- ...SHEET THE TWO SHEETS PRESENTED AS *BAA* AND *BAB* ON SHEET RECORDS BELOW ARE ACTUALLY EIGHT-STRANDED BETA-BARRELS. EACH IS REPRESENTED BY A NINE-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. |
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 172.7 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 136.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Related structure data | ![]() 1xlaC ![]() 1xlbC ![]() 1xlcC ![]() 1xldC ![]() 1xleC ![]() 1xlfC ![]() 1xlgC ![]() 1xlhC ![]() 1xliC ![]() 1xlkC ![]() 1xllC C: citing same article ( |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
Unit cell |
| ||||||||
Atom site foot note | 1: RESIDUES PRO A 186 AND PRO B 186 ARE CIS PROLINES. |
-
Components
#1: Protein | ![]() Mass: 43209.168 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() #2: Sugar | ![]() #3: Chemical | #4: Water | ChemComp-HOH / | ![]() |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.88 Å3/Da / Density % sol: 57.23 % | |||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Crystal grow![]() | *PLUS Temperature: 18 ℃ / pH: 7 / Method: vapor diffusion, hanging drop | |||||||||||||||||||||||||
Components of the solutions | *PLUS
|
-Data collection
Reflection | *PLUS Highest resolution: 2.5 Å / Num. obs: 33467 / % possible obs: 95.5 % / Num. measured all: 61344 / Rmerge(I) obs: 0.055 |
---|
-
Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 2.5→10 Å Details: THIS IS MODEL(6) AS DESCRIBED IN THE JRNL RECORDS ABOVE. EACH OF THE TWO MONOMERS OF THE TETRAMER IN THE ASYMMETRIC UNIT HAVE ONE MN++ AND ONE XYLITOL BOUND AT PH 6. HOH 398 IS FOUND AT A ...Details: THIS IS MODEL(6) AS DESCRIBED IN THE JRNL RECORDS ABOVE. EACH OF THE TWO MONOMERS OF THE TETRAMER IN THE ASYMMETRIC UNIT HAVE ONE MN++ AND ONE XYLITOL BOUND AT PH 6. HOH 398 IS FOUND AT A CATION BINDING SITE AND MAY REPRESENT PARTIALLY BOUND MN++.
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.5→10 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 25.8 Å2 |