+Open data
-Basic information
Entry | Database: PDB / ID: 1vjw | ||||||
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Title | STRUCTURE OF OXIDOREDUCTASE (NADP+(A),FERREDOXIN(A)) | ||||||
Components | FERREDOXIN(A) | ||||||
Keywords | OXIDOREDUCTASE / THERMOSTABLE / ELECTRON TRANSPORT / IRON-SULFUR / 4FE-4S | ||||||
Function / homology | Function and homology information 4 iron, 4 sulfur cluster binding / electron transfer activity / iron ion binding Similarity search - Function | ||||||
Biological species | Thermotoga maritima (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.75 Å | ||||||
Authors | Macedo-Ribeiro, S. / Darimont, B. / Sterner, R. / Huber, R. | ||||||
Citation | Journal: Structure / Year: 1996 Title: Small structural changes account for the high thermostability of 1[4Fe-4S] ferredoxin from the hyperthermophilic bacterium Thermotoga maritima. Authors: Macedo-Ribeiro, S. / Darimont, B. / Sterner, R. / Huber, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1vjw.cif.gz | 18.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1vjw.ent.gz | 13.8 KB | Display | PDB format |
PDBx/mmJSON format | 1vjw.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vj/1vjw ftp://data.pdbj.org/pub/pdb/validation_reports/vj/1vjw | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 6218.028 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Thermotoga maritima (bacteria) / Plasmid: M13-MP19 / Production host: Escherichia coli (E. coli) / Strain (production host): JM 109 / References: UniProt: P46797 |
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#2: Chemical | ChemComp-SF4 / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.01 Å3/Da / Density % sol: 38.74 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 20 ℃ / pH: 7.5 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.5418 |
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Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Aug 8, 1995 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 5864 / % possible obs: 97.9 % / Observed criterion σ(I): 2.5 / Rmerge(I) obs: 0.078 |
Reflection | *PLUS Highest resolution: 1.7 Å / Lowest resolution: 19.2 Å / Num. measured all: 36264 |
Reflection shell | *PLUS Highest resolution: 1.75 Å / Lowest resolution: 1.81 Å / % possible obs: 93.1 % |
-Processing
Software |
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Refinement | Resolution: 1.75→10 Å / σ(F): 2 /
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Displacement parameters | Biso mean: 20.75 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.75→10 Å
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Refine LS restraints |
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