[English] 日本語
![](img/lk-miru.gif)
- PDB-1tnv: CRYSTAL STRUCTURAL ANALYSIS OF TOBACCO NECROSIS VIRUS (TNV) AT 5 ... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1tnv | ||||||
---|---|---|---|---|---|---|---|
Title | CRYSTAL STRUCTURAL ANALYSIS OF TOBACCO NECROSIS VIRUS (TNV) AT 5 ANGSTROMS RESOLUTION | ||||||
![]() |
| ||||||
![]() | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Tsukihara, T. | ||||||
![]() | ![]() Title: Crystal structural analysis of tobacco necrosis virus at 5 A resolution. Authors: Bando, M. / Morimoto, Y. / Sato, T. / Tsukihara, T. #1: ![]() Title: Symmetry and Subunit Arrangement of Tobacco Necrosis Virus Authors: Tsukihara, T. / Yokota, Y. / Koyama, T. / Fukuyama, K. / Matsubara, H. #2: ![]() Title: Crystallization and Preliminary X-Ray Diffraction Studies of Tobacco Necrosis Virus Authors: Fukuyama, K. / Hirota, S. / Tsukihara, T. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 55.7 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 36.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| x 60||||||||||||||||||
2 |
| ||||||||||||||||||
3 | ![]()
| x 5||||||||||||||||||
4 | ![]()
| x 6||||||||||||||||||
5 | ![]()
| ||||||||||||||||||
6 | ![]()
| x 5||||||||||||||||||
Unit cell |
| ||||||||||||||||||
Atom site foot note | 1: UNK B 111 - UNK B 112 OMEGA = 211.95 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION | ||||||||||||||||||
Symmetry | Point symmetry: (Hermann–Mauguin notation![]() ![]() ![]() | ||||||||||||||||||
Noncrystallographic symmetry (NCS) | NCS oper:
|
-
Components
#1: Protein | Mass: 15847.501 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) ![]() #2: Protein | | Mass: 17889.996 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() Sequence details | THE PRIMARY SEQUENCE OF TNV IS NOT YET KNOWN; THEREFORE ALL RESIDUES WERE MODELED AS GLY AND ARE ...THE PRIMARY SEQUENCE OF TNV IS NOT YET KNOWN; THEREFORE ALL RESIDUES WERE MODELED AS GLY AND ARE REPRESENTE | |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal grow![]() | *PLUS pH: 6 / Method: microdialysis |
---|---|
Components of the solutions | *PLUS Conc.: 0.4 M / Common name: sodium phosphate |
-Data collection
Reflection | *PLUS Highest resolution: 5 Å / Lowest resolution: 100 Å / Num. all: 29161 / Num. obs: 24127 / Observed criterion σ(F): 5 / Num. measured all: 90251 / Rmerge(I) obs: 0.115 |
---|---|
Reflection shell | *PLUS Highest resolution: 5 Å / Lowest resolution: 6 Å / Num. possible: 12028 / Num. measured obs: 9515 |
-
Processing
Software | Name: NCS / Classification: refinement | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Highest resolution: 5 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 5 Å
| ||||||||||||
Software | *PLUS Name: NCS / Classification: refinement | ||||||||||||
Refinement | *PLUS Rfactor obs: 0.184 / Rfactor Rwork![]() | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |