+Open data
-Basic information
Entry | Database: PDB / ID: 1tim | ||||||
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Title | STRUCTURE OF TRIOSE PHOSPHATE ISOMERASE FROM CHICKEN MUSCLE | ||||||
Components | TRIOSEPHOSPHATE ISOMERASE | ||||||
Keywords | ISOMERASE(INTRAMOLECULAR OXIDOREDUCTASE) / ISOMERASE | ||||||
Function / homology | Function and homology information Glycolysis / Glycolysis / Gluconeogenesis / Gluconeogenesis / methylglyoxal biosynthetic process / methylglyoxal synthase / methylglyoxal synthase activity / glyceraldehyde-3-phosphate biosynthetic process / glycerol catabolic process / triose-phosphate isomerase ...Glycolysis / Glycolysis / Gluconeogenesis / Gluconeogenesis / methylglyoxal biosynthetic process / methylglyoxal synthase / methylglyoxal synthase activity / glyceraldehyde-3-phosphate biosynthetic process / glycerol catabolic process / triose-phosphate isomerase / triose-phosphate isomerase activity / canonical glycolysis / gluconeogenesis / glycolytic process / ubiquitin protein ligase binding / protein homodimerization activity / cytosol Similarity search - Function | ||||||
Biological species | Gallus gallus (chicken) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.5 Å | ||||||
Authors | Banner, D.W. / Bloomer, A.C. / Petsko, G.A. / Phillips, D.C. / Wilson, I.A. | ||||||
Citation | Journal: Biochem.Biophys.Res.Commun. / Year: 1976 Title: Atomic coordinates for triose phosphate isomerase from chicken muscle. Authors: Banner, D.W. / Bloomer, A. / Petsko, G.A. / Phillips, D.C. / Wilson, I.A. #1: Journal: Philos.Trans.R.Soc.London,Ser.B / Year: 1981 Title: On the Three-Dimensional Structure and Catalytic Mechanism of Triose Phosphate Isomerase Authors: Alber, T. / Banner, D.W. / Bloomer, A.C. / Petsko, G.A. / Phillips, D. / Rivers, P.S. / Wilson, I.A. #2: Journal: Nature / Year: 1975 Title: Structure of Chicken Muscle Triose Phosphate Isomerase Determined Crystallographically at 2.5 Angstroms Resolution Using Amino Acid Sequence Data Authors: Banner, D.W. / Bloomer, A.C. / Petsko, G.A. / Phillips, D.C. / Pogson, C.I. / Wilson, I.A. / Corran, P.H. / Furth, A.J. / Milman, J.D. / Offord, R.E. / Priddle, J.D. / Waley, S.G. #3: Journal: Cold Spring Harbor Symp.Quant.Biol. / Year: 1972 Title: Crystallographic Studies of Chicken Triose Phosphate Isomerase Authors: Banner, D.W. / Bloomer, A.C. / Petsko, G.A. / Phillips, D.C. #4: Journal: J.Mol.Biol. / Year: 1976 Title: Studies of the Histidine Residues of Triose Phosphate Isomerase by Proton Magnetic Resonance and X-Ray Crystallography Authors: Browne, C.A. / Campbell, I.D. / Kiener, P.A. / Phillips, D.C. / Waley, S.G. / Wilson, I.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1tim.cif.gz | 91.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1tim.ent.gz | 70.2 KB | Display | PDB format |
PDBx/mmJSON format | 1tim.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ti/1tim ftp://data.pdbj.org/pub/pdb/validation_reports/ti/1tim | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.7199, 0.0924, -0.6879), Vector: Details | THE MTRIX TRANSFORMATION BELOW WILL TRANSFORM THE COORDINATES OF SUBUNIT 2 (B CHAIN) ONTO THOSE OF SUBUNIT 1 (A CHAIN) WITH AN RMS SEPARATION BETWEEN EQUIVALENT CA ATOMS OF 1.2 ANGSTROMS WHEN THE SUBUNITS ARE SUPERIMPOSED. | |
-Components
#1: Protein | Mass: 26581.408 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Gallus gallus (chicken) / References: UniProt: P00940, triose-phosphate isomerase Sequence details | CHICKEN TRIOSE PHOSPHATE ISOMERASE HAS 247 AMINO ACID RESIDUES BUT HAS THEM NUMBERED 1-2, 4-248. ...CHICKEN TRIOSE PHOSPHATE ISOMERASE HAS 247 AMINO ACID RESIDUES BUT HAS THEM NUMBERED 1-2, 4-248. RESIDUE 3 IS CONSIDERED | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.3 Å3/Da / Density % sol: 46.53 % |
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Crystal grow | *PLUS Method: unknown |
-Processing
Refinement | Highest resolution: 2.5 Å | ||||||||||||
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Refinement step | Cycle: LAST / Highest resolution: 2.5 Å
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