+Open data
-Basic information
Entry | Database: PDB / ID: 1thi | ||||||
---|---|---|---|---|---|---|---|
Title | CRYSTAL STRUCTURES OF TWO INTENSELY SWEET PROTEINS | ||||||
Components | THAUMATIN I | ||||||
Keywords | SWEET TASTING PROTEIN | ||||||
Function / homology | Thaumatin, conserved site / Thaumatin family signature. / Thaumatin family / Thaumatin family / Thaumatin family profile. / Thaumatin family / Osmotin/thaumatin-like superfamily / cytoplasmic vesicle / Thaumatin I Function and homology information | ||||||
Biological species | Thaumatococcus daniellii (katemfe) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 3.2 Å | ||||||
Authors | Kim, S.-H. | ||||||
Citation | Journal: Trends Biochem.Sci. / Year: 1988 Title: Crystal structures of two intensely sweet proteins. Authors: Kim, S.H. / de Vos, A. / Ogata, C. #1: Journal: Proc.Natl.Acad.Sci.USA / Year: 1985 Title: Three-Dimensional Structure of Thaumatin I, an Intensely Sweet Protein Authors: Devos, A.M. / Hatada, M. / Van Derwel, H. / Krabbendam, H. / Peerdeman, A.F. / Kim, S.-H. #2: Journal: FEBS Lett. / Year: 1975 Title: Crystallization and Crystal Data of Thaumatin I, a Sweet-Tasting Protein from Thaumatococcus Daniellii Benth Authors: Van Derwel, H. / Vansoest, T.C. / Royers, E.C. #3: Journal: Eur.J.Biochem. / Year: 1979 Title: The Complete Amino-Acid Sequence of the Sweet Protein Thaumatin I Authors: Iyengar, R.B. / Smits, P. / Van Derouderaa, F. / Van Derwel, H. / Van Brouwershaven, J. / Ravestein, P. / Richters, G. / Vanwassenaar, P.D. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1thi.cif.gz | 15.8 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1thi.ent.gz | 7.3 KB | Display | PDB format |
PDBx/mmJSON format | 1thi.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/th/1thi ftp://data.pdbj.org/pub/pdb/validation_reports/th/1thi | HTTPS FTP |
---|
-Related structure data
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-Components
#1: Protein | Mass: 22227.059 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Thaumatococcus daniellii (katemfe) / References: UniProt: P02883 |
---|
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
---|
-Sample preparation
Crystal | Density Matthews: 2.33 Å3/Da / Density % sol: 47.23 % | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Crystal grow | *PLUS pH: 7 / Method: vapor-phase equilibrium | ||||||||||||||||||||
Components of the solutions | *PLUS
|
-Processing
Refinement | Highest resolution: 3.2 Å | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement step | Cycle: LAST / Highest resolution: 3.2 Å
| ||||||||||||
Refinement | *PLUS Highest resolution: 3.2 Å | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |