+Open data
-Basic information
Entry | Database: PDB / ID: 1s3o | ||||||
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Title | Human mitochondrial single strand DNA binding protein (hmSSB) | ||||||
Components | Single-stranded DNA-binding protein, mitochondrial | ||||||
Keywords | DNA BINDING PROTEIN / OB fold | ||||||
Function / homology | Function and homology information positive regulation of mitochondrial DNA replication / positive regulation of helicase activity / mitochondrial DNA replication / DNA unwinding involved in DNA replication / mitochondrial nucleoid / Transcriptional activation of mitochondrial biogenesis / single-stranded DNA binding / protein homotetramerization / mitochondrial matrix / chromatin binding ...positive regulation of mitochondrial DNA replication / positive regulation of helicase activity / mitochondrial DNA replication / DNA unwinding involved in DNA replication / mitochondrial nucleoid / Transcriptional activation of mitochondrial biogenesis / single-stranded DNA binding / protein homotetramerization / mitochondrial matrix / chromatin binding / protein homodimerization activity / mitochondrion / RNA binding / extracellular exosome / identical protein binding / nucleus Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / MIR / Resolution: 2.47 Å | ||||||
Authors | Venclovas, C. / Ginalski, K. / Kang, C. | ||||||
Citation | Journal: Protein Sci. / Year: 2004 Title: Sequence-structure mapping errors in the PDB: OB-fold domains Authors: Venclovas, C. / Ginalski, K. / Kang, C. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1s3o.cif.gz | 53.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1s3o.ent.gz | 40.1 KB | Display | PDB format |
PDBx/mmJSON format | 1s3o.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/s3/1s3o ftp://data.pdbj.org/pub/pdb/validation_reports/s3/1s3o | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 15216.124 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Homo sapiens (human) / References: UniProt: Q04837 #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.03 Å3/Da / Density % sol: 39.48 % |
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Crystal grow | Method: vapor diffusion, sitting drop / pH: 7 / Details: pH 7.0, VAPOR DIFFUSION, SITTING DROP |
-Data collection
Diffraction | Mean temperature: 277 K |
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Diffraction source | Source: ROTATING ANODE |
Detector | Detector: IMAGE PLATE |
Radiation | Monochromator: yale mirror / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 2.4→25 Å / Num. all: 9790 / Num. obs: 9017 / % possible obs: 92.1 % / Observed criterion σ(F): 2 / Observed criterion σ(I): 2 |
-Processing
Software |
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Refinement | Method to determine structure: MIR / Resolution: 2.47→10 Å / σ(F): 2 / σ(I): 1.4
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Refinement step | Cycle: LAST / Resolution: 2.47→10 Å
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