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Open data
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Basic information
Entry | Database: PDB / ID: 1s29 | ||||||
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Title | La autoantigen N-terminal domain | ||||||
![]() | La protein![]() | ||||||
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Function / homology | ![]() maturation of 5S rRNA / tRNA processing / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Dong, G. / Chakshusmathi, G. / Wolin, S.L. / Reinisch, K.M. | ||||||
![]() | ![]() Title: Structure of the La motif: a winged helix domain mediates RNA binding via a conserved aromatic patch. Authors: Dong, G. / Chakshusmathi, G. / Wolin, S.L. / Reinisch, K.M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 28 KB | Display | ![]() |
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PDB format | ![]() | 21.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 10651.736 Da / Num. of mol.: 1 / Fragment: N-terminal fragment Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.24 Å3/Da / Density % sol: 45.14 % / Description: Friedel pairs were used. | ||||||||||||||||||||||||||||||||||||
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Crystal grow![]() | Temperature: 277 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: PEG3500, GLYCEROL, HEPES, DTT, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K | ||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 4 ℃ / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 110 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: BRANDEIS / Detector: CCD / Date: Aug 15, 2003 |
Radiation | Monochromator: double-crystal monochromator Si(111), beam focused by a toroidal mirror Protocol: SAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.6→20 Å / Num. all: 24632 / Num. obs: 24632 / % possible obs: 99.5 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Biso Wilson estimate: 15.4 Å2 / Rmerge(I) obs: 0.032 / Net I/σ(I): 41 |
Reflection shell | Resolution: 1.6→1.62 Å / Redundancy: 4 % / Rmerge(I) obs: 0.06 / Mean I/σ(I) obs: 21 / % possible all: 95.7 |
Reflection | *PLUS Num. obs: 24672 / Redundancy: 7 % |
Reflection shell | *PLUS Highest resolution: 1.59 Å / Lowest resolution: 1.65 Å / % possible obs: 95.7 % / Redundancy: 4.1 % / Num. unique obs: 2382 / Rmerge(I) obs: 0.06 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 70.7058 Å2 / ksol: 0.548385 e/Å3 | ||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 13.1 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.6→19.45 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.6→1.7 Å / Rfactor Rfree error: 0.021 / Total num. of bins used: 6
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Xplor file |
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Refinement | *PLUS Highest resolution: 1.6 Å / Lowest resolution: 20 Å / % reflection Rfree: 10 % / Rfactor Rfree![]() | ||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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