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Yorodumi- PDB-1qxn: Solution Structure of the 30 kDa Polysulfide-sulfur Transferase H... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1qxn | ||||||
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Title | Solution Structure of the 30 kDa Polysulfide-sulfur Transferase Homodimer from Wolinella Succinogenes | ||||||
Components | sulfide dehydrogenaseFlavocytochrome c sulfide dehydrogenase | ||||||
Keywords | TRANSFERASE / POLYSULFIDE-SULFUR TRANSFERASE / SUD / HOMODIMER | ||||||
Function / homology | Function and homology information Rhodanese-like domain / Oxidized Rhodanese; domain 1 / Rhodanese Homology Domain / Rhodanese-like domain / Rhodanese domain profile. / Rhodanese-like domain superfamily / Rhodanese-like domain / 3-Layer(aba) Sandwich / Alpha Beta Similarity search - Domain/homology | ||||||
Biological species | Wolinella succinogenes (bacteria) | ||||||
Method | SOLUTION NMR / Simulated annealing with torsion angle dynamics | ||||||
Authors | Lin, Y.J. / Dancea, F. / Loehr, F. / Klimmek, O. / Pfeiffer-Marek, S. / Nilges, M. / Wienk, H. / Kroeger, A. / Rueterjans, H. | ||||||
Citation | Journal: Biochemistry / Year: 2004 Title: Solution Structure of the 30 kDa Polysulfide-Sulfur Transferase Homodimer from Wolinella succinogenes Authors: Lin, Y.J. / Dancea, F. / Loehr, F. / Klimmek, O. / Pfeiffer-Marek, S. / Nilges, M. / Wienk, H. / Kroeger, A. / Rueterjans, H. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1qxn.cif.gz | 838.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1qxn.ent.gz | 726.7 KB | Display | PDB format |
PDBx/mmJSON format | 1qxn.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qx/1qxn ftp://data.pdbj.org/pub/pdb/validation_reports/qx/1qxn | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 15357.690 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Wolinella succinogenes (bacteria) / Plasmid: pQE60_Sud-HIS6 / Production host: Escherichia coli (E. coli) / Strain (production host): DH5a / References: UniProt: Q56748 #2: Chemical | |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample conditions | Ionic strength: less than 100mM / pH: 7.6 / Pressure: 1 atm / Temperature: 300 K | |||||||||||||||||||||||||||
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: Simulated annealing with torsion angle dynamics / Software ordinal: 1 Details: The final structures were refined in explicit solvent (water) | ||||||||||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 10 |