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Yorodumi- PDB-1qjt: SOLUTION STRUCTURE OF THE APO EH1 DOMAIN OF MOUSE EPIDERMAL GROWT... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1qjt | ||||||
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Title | SOLUTION STRUCTURE OF THE APO EH1 DOMAIN OF MOUSE EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE 15, EPS15 | ||||||
Components | EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE SUBSTRATE 15, EPS15 | ||||||
Keywords | GROWTH FACTOR / EH DOMAIN / EPS15 / EF-HAND / SOLUTION STRUCTURE / S100 PROTEIN | ||||||
Function / homology | Function and homology information Negative regulation of MET activity / EGFR downregulation / ubiquitin-dependent endocytosis / Golgi to endosome transport / AP-2 adaptor complex / clathrin coat of coated pit / postsynaptic neurotransmitter receptor internalization / Cargo recognition for clathrin-mediated endocytosis / Clathrin-mediated endocytosis / endocytic recycling ...Negative regulation of MET activity / EGFR downregulation / ubiquitin-dependent endocytosis / Golgi to endosome transport / AP-2 adaptor complex / clathrin coat of coated pit / postsynaptic neurotransmitter receptor internalization / Cargo recognition for clathrin-mediated endocytosis / Clathrin-mediated endocytosis / endocytic recycling / clathrin-coated vesicle / ciliary membrane / endosomal transport / positive regulation of receptor recycling / polyubiquitin modification-dependent protein binding / clathrin-coated pit / basal plasma membrane / ubiquitin binding / SH3 domain binding / endocytosis / regulation of protein localization / regulation of cell population proliferation / early endosome membrane / postsynapse / early endosome / cadherin binding / apical plasma membrane / glutamatergic synapse / synapse / calcium ion binding / identical protein binding / plasma membrane / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | MUS MUSCULUS (house mouse) | ||||||
Method | SOLUTION NMR / TAD | ||||||
Authors | Whitehead, B. / Tessari, M. / Carotenuto, A. / van Bergen en Henegouwen, P.M. / Vuister, G.W. | ||||||
Citation | Journal: Biochemistry / Year: 1999 Title: The Eh1 Domain of Eps15 is Structurally Classified as a Member of the S100 Subclass of EF-Hand Containing Proteins Authors: Whitehead, B. / Tessari, M. / Carotenuto, A. / van Bergen en Henegouwen, P.M. / Vuister, G.W. #1: Journal: J.Biomol.NMR / Year: 1998 Title: Sequence-Specific 1H, 13C and 15N Assignment of the Eh1 Domain of Mouse Eps15 Authors: Whitehead, B. / Tessari, M. / Versteeg, H.H. / van Delft, S. / van Bergen en Henegouwen, P.M. / Vuister, G.W. | ||||||
History |
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Remark 650 | HELIX DETERMINATION METHOD: AUTHOR PROVIDED. | ||||||
Remark 700 | SHEET DETERMINATION METHOD: AUTHOR PROVIDED. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1qjt.cif.gz | 874.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1qjt.ent.gz | 732.5 KB | Display | PDB format |
PDBx/mmJSON format | 1qjt.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qj/1qjt ftp://data.pdbj.org/pub/pdb/validation_reports/qj/1qjt | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 10672.210 Da / Num. of mol.: 1 / Fragment: N-TERMINAL EH1 DOMAIN RESIDUES 1-120 Source method: isolated from a genetically manipulated source Details: STRUCTURED PART SELECTED FROM LARGER FRAGMENT / Source: (gene. exp.) MUS MUSCULUS (house mouse) / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): K10 / References: UniProt: P42567 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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NMR details | Text: STRUCTURE DETERMINED USING TRIPLE-RESONANCE HETERONUCLEAR NMR SPECTROSCOPY |
-Sample preparation
Details | Contents: 90% H2O/10% D2O |
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Sample conditions | Ionic strength: 100 mM NaCl M / pH: 5.2 / Pressure: 1 atm / Temperature: 298 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: TAD / Software ordinal: 1 Details: STRUCTURE CALCULATION DETAILS CAN BE FOUND IN JRNL CITATION | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: LOWEST OVERALL TARGET FUNCTION Conformers calculated total number: 100 / Conformers submitted total number: 30 |