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Yorodumi- PDB-1qah: CRYSTAL STRUCTURE OF PERCHLORIC ACID SOLUBLE PROTEIN-A TRANSLATIO... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1qah | ||||||
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Title | CRYSTAL STRUCTURE OF PERCHLORIC ACID SOLUBLE PROTEIN-A TRANSLATIONAL INHIBITOR | ||||||
Components | PERCHLORIC ACID SOLUBLE PROTEIN | ||||||
Keywords | ALPHA-BETA STRUCTURE | ||||||
Function / homology | Function and homology information Threonine catabolism / 2-iminobutanoate/2-iminopropanoate deaminase / 2-iminobutanoate/2-iminopropanoate deaminase / organonitrogen compound catabolic process / deaminase activity / response to salt / ion binding / G1 to G0 transition / response to lipid / long-chain fatty acid binding ...Threonine catabolism / 2-iminobutanoate/2-iminopropanoate deaminase / 2-iminobutanoate/2-iminopropanoate deaminase / organonitrogen compound catabolic process / deaminase activity / response to salt / ion binding / G1 to G0 transition / response to lipid / long-chain fatty acid binding / mRNA destabilization / mRNA catabolic process / transition metal ion binding / kidney development / lung development / brain development / peroxisome / negative regulation of epithelial cell proliferation / RNA endonuclease activity, producing 3'-phosphomonoesters / negative regulation of translation / mitochondrial matrix / mRNA binding / mitochondrion / identical protein binding / nucleus / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Rattus norvegicus (Norway rat) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 1.8 Å | ||||||
Authors | Djinovic Carugo, K. / Oka, T. | ||||||
Citation | Journal: To be Published Title: Crystal Structure of Perchloric Acid Soluble Protein-a Translational Inhibitor Authors: Djinovic Carugo, K. / Oka, T. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1qah.cif.gz | 68.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1qah.ent.gz | 51.6 KB | Display | PDB format |
PDBx/mmJSON format | 1qah.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qa/1qah ftp://data.pdbj.org/pub/pdb/validation_reports/qa/1qah | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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3 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: Protein | Mass: 14184.187 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Rattus norvegicus (Norway rat) / Organ: LIVER, KIDNEY / References: UniProt: P52759 #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.12 Å3/Da / Density % sol: 42.04 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 4.5 Details: VAPOR DIFFUSION, HANGING DROP, PH 4.5, 293K, PEG 8000, SODIUM ACETATE, AMMONIUM SULPHATE |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: BM14 / Wavelength: 0.9183 |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Oct 5, 1998 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9183 Å / Relative weight: 1 |
Reflection | Resolution: 1.8→63.2 Å / Num. all: 22619 / Num. obs: 22619 / % possible obs: 97.8 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 3.34 % / Biso Wilson estimate: 24.1 Å2 / Rmerge(I) obs: 0.031 / Net I/σ(I): 34.14 |
Reflection shell | Resolution: 1.8→1.83 Å / Redundancy: 2.93 % / Rmerge(I) obs: 0.277 / % possible all: 96.6 |
-Processing
Software |
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Refinement | Resolution: 1.8→40 Å / Cross valid method: FREE R-VALUE / σ(F): 0 / σ(I): 0 / Stereochemistry target values: ENGH & HUBER
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Refinement step | Cycle: LAST / Resolution: 1.8→40 Å
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Refine LS restraints |
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