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- PDB-1pvv: Refined Structure of Pyrococcus furiosus Ornithine Carbamoyltrans... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1pvv | ||||||
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Title | Refined Structure of Pyrococcus furiosus Ornithine Carbamoyltransferase at 1.87 A | ||||||
![]() | Ornithine carbamoyltransferase![]() | ||||||
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Function / homology | ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Massant, J. / Wouters, J. / Glansdorff, N. | ||||||
![]() | ![]() Title: Refined structure of Pyrococcus furiosus ornithine carbamoyltransferase at 1.87 A. Authors: Massant, J. / Wouters, J. / Glansdorff, N. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 79.6 KB | Display | ![]() |
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PDB format | ![]() | 58.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 1a1sS S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Details | The biological assembly is a dodecamer generated from the monomer in the asymmetric unit |
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Components
#1: Protein | ![]() Mass: 35229.387 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() ![]() | ||
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#2: Chemical | ![]() #3: Water | ChemComp-HOH / | ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.23 Å3/Da / Density % sol: 67.02 % | ||||||||||||||||||||||||||||||||||||
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Crystal grow![]() | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 4.6 Details: sodium acetate, ammonium sulfate, glycerol, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K | ||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Sep 1, 2001 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.87→99 Å / Num. all: 42928 / Num. obs: 42928 / % possible obs: 98.5 % / Rmerge(I) obs: 0.033 |
Reflection shell | Resolution: 1.87→1.91 Å / Rmerge(I) obs: 0.187 / % possible all: 86.5 |
Reflection | *PLUS Num. measured all: 304009 |
Reflection shell | *PLUS % possible obs: 86.5 % |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: PDB ENTRY 1A1S Resolution: 1.87→99 Å / Num. parameters: 10575 / Num. restraintsaints: 10110 / Cross valid method: FREE R / σ(F): 0 / Stereochemistry target values: ENGH AND HUBER
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Refine analyze | Num. disordered residues: 0 / Occupancy sum hydrogen: 0 / Occupancy sum non hydrogen: 2648.48 | |||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.87→99 Å
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Refine LS restraints |
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LS refinement shell |
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