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Yorodumi- PDB-1oz8: Intramolecular higher-order packing of parallel quadruplexes comp... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1oz8 | ||||||||||||||||||
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Title | Intramolecular higher-order packing of parallel quadruplexes comprising a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad of GGA triplet repeat DNA | ||||||||||||||||||
Components | 5'-D(*Keywords | DNA / intramolecular packing of parallel quadruplexes | Function / homology | DNA / DNA (> 10) | Function and homology information Method | SOLUTION NMR / simulated annealing | Authors | Matsugami, A. / Okuizumi, T. / Uesugi, S. / Katahira, M. | Citation | Journal: J.BIOL.CHEM. / Year: 2003 Title: Intramolecular Higher Order Packing of Parallel Quadruplexes Comprising a G:G:G:G Tetrad and a G(:A):G(:A):G(:A):G Heptad of GGA Triplet Repeat DNA Authors: Matsugami, A. / Okuizumi, T. / Uesugi, S. / Katahira, M. #1: Journal: J.Mol.Biol. / Year: 2001 Title: An Intramolecular Quadruplex of (GGA)(4) Triplet Repeat DNA with a G:G:G:G Tetrad and a G(:A):G(:A):G(:A):G Heptad, and its Dimeric Interaction Authors: Matsugami, A. / Ouhashi, K. / Kanagawa, M. / Liu, H. / Kanagawa, S. / Uesugi, S. / Katahira, M. #2: Journal: J.Mol.Biol. / Year: 2002 Title: A Dimeric RNA Quadruplex Architecture Comprised of Two G:G(:A):G:G(:A) Hexads, G:G:G:G Tetrads and UUUU Loops Authors: Liu, H. / Matsugami, A. / Katahira, M. / Uesugi, S. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1oz8.cif.gz | 305.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1oz8.ent.gz | 249.1 KB | Display | PDB format |
PDBx/mmJSON format | 1oz8.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/oz/1oz8 ftp://data.pdbj.org/pub/pdb/validation_reports/oz/1oz8 | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 7727.991 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample conditions |
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-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 | ||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |