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- PDB-1nda: THE STRUCTURE OF TRYPANOSOMA CRUZI TRYPANOTHIONE REDUCTASE IN THE... -
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Basic information
Entry | Database: PDB / ID: 1nda | ||||||
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Title | THE STRUCTURE OF TRYPANOSOMA CRUZI TRYPANOTHIONE REDUCTASE IN THE OXIDIZED AND NADPH REDUCED STATE | ||||||
![]() | TRYPANOTHIONE OXIDOREDUCTASE | ||||||
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Function / homology | ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Lantwin, C.B. / Kabsch, W. / Pai, E.F. / Schlichting, I. / Krauth-Siegel, R.L. | ||||||
![]() | ![]() Title: The structure of Trypanosoma cruzi trypanothione reductase in the oxidized and NADPH reduced state. Authors: Lantwin, C.B. / Schlichting, I. / Kabsch, W. / Pai, E.F. / Krauth-Siegel, R.L. #1: ![]() Title: Crystallization and Preliminary Crystallographic Analysis of Trypanothione Reductase from Trypanosoma Cruzi, the Causative Agent of Chagas' Disease Authors: Krauth-Siegel, R.L. / Sticherling, C. / Jost, I. / Walsh, C.T. / Pai, E.F. / Kabsch, W. / Lantwin, C.B. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 360.3 KB | Display | ![]() |
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PDB format | ![]() | 305.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Atom site foot note | 1: PRO A 42 - PRO A 43 OMEGA = 35.35 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 2: ASN A 352 - PRO A 353 OMEGA = 144.94 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 3: CIS PROLINE - PRO A 369 / 4: CIS PROLINE - PRO A 461 5: PRO B 42 - PRO B 43 OMEGA = 35.38 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 6: ASN B 352 - PRO B 353 OMEGA = 144.93 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 7: CIS PROLINE - PRO B 369 / 8: CIS PROLINE - PRO B 461 | ||||||||
Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.11639, -0.0086, -0.9932), Vector ![]() Details | THE ASYMMETRIC UNIT CONTAINS FOUR MONOMERS. TWO MONOMERS ARE PRESENTED IN THIS ENTRY WITH CHAIN IDENTIFIERS *A* AND *B*. THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL YIELD APPROXIMATE COORDINATES FOR THE OTHER TWO MONOMERS IN THE ASYMMETRIC UNIT. | |
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Components
#1: Protein | Mass: 53797.453 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | ChemComp-FAD / ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.62 Å3/Da / Density % sol: 66.07 % | |||||||||||||||||||||||||
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Crystal grow![]() | *PLUS pH: 8 / Method: unknown | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 3.3 Å / Num. all: 46716 / Num. obs: 41811 / % possible obs: 89.5 % / Num. measured all: 88764 / Rmerge(I) obs: 0.127 |
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Processing
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Refinement | Rfactor Rwork![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 3.3 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.206 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d / Dev ideal: 1.3 |