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Yorodumi- PDB-1muv: Sheared A(anti)-A(anti) Base Pairs in a Destabilizing 2x2 Interna... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1muv | ||||||||||||||||||
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Title | Sheared A(anti)-A(anti) Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2 | ||||||||||||||||||
Components | 5'-R(*Keywords | RNA / ribonucleic acid / duplex / tandem mismatch / AA mismatch | Function / homology | RNA | Function and homology information Method | SOLUTION NMR / simulated annealing, energy minimization | Authors | Znosko, B.M. / Burkard, M.E. / Schroeder, S.J. / Krugh, T.R. / Turner, D.H. | Citation | Journal: Biochemistry / Year: 2002 Title: Sheared Aanti-Aanti Base Pairs in a Destabilizing 2x2 Internal Loop: The NMR Structure of 5'(rGGCAAGCCU)2 Authors: Znosko, B.M. / Burkard, M.E. / Schroeder, S.J. / Krugh, T.R. / Turner, D.H. #1: Journal: Biochemistry / Year: 2002 Title: Molecular Recognition in Purine-Rich Internal Loops: Thermodynamic, Structural, and Dynamic Consequences of Purine for Adenine Substitutions in 5'(rGGCAAGCCU)2 Authors: Znosko, B.M. / Burkard, M.E. / Krugh, T.R. / Turner, D.H. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1muv.cif.gz | 19 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1muv.ent.gz | 12.2 KB | Display | PDB format |
PDBx/mmJSON format | 1muv.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mu/1muv ftp://data.pdbj.org/pub/pdb/validation_reports/mu/1muv | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 2870.783 Da / Num. of mol.: 2 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR experiment | Type: 2D NOESY |
-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 500 MHz |
-Processing
NMR software |
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Refinement | Method: simulated annealing, energy minimization / Software ordinal: 1 Details: The structure is based on a total of 83 interproton distance restraints per strand, 18 hydrogen bond restraints, and 46 dihedral angle restraints per strand | ||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||
NMR ensemble | Conformers submitted total number: 1 |