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Yorodumi- PDB-1mo1: CRYSTAL STRUCTURE AT 1.8 ANGSTROMS OF SELENO METHIONYLED CRH, THE... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1mo1 | ||||||
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Title | CRYSTAL STRUCTURE AT 1.8 ANGSTROMS OF SELENO METHIONYLED CRH, THE BACILLUS SUBTILIS CATABOLITE REPRESSION CONTAINING PROTEIN CRH REVEALS AN UNEXPECTED SWAPPING DOMAIN AS AN UNTERTWINNED DIMER | ||||||
Components | (Hpr-like protein crh) x 2 | ||||||
Keywords | TRANSPORT PROTEIN / Open-Faced B-sandwich / Phosphotransferase system / Swapping domain | ||||||
Function / homology | Function and homology information Phosphotransferase system, HPr serine phosphorylation site / PTS HPR domain serine phosphorylation site signature. / HPr-like / Histidine-containing Protein; Chain: A; / Phosphocarrier protein HPr-like / HPr-like superfamily / PTS HPr component phosphorylation site / PTS HPR domain profile. / 2-Layer Sandwich / Alpha Beta Similarity search - Domain/homology | ||||||
Biological species | Bacillus subtilis (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 1.8 Å | ||||||
Authors | Juy, M.R. / Haser, R. | ||||||
Citation | Journal: To be Published Title: Crystal Structure at 1.8 A of the Bacillus Subtil Catabolite Bacillus Subtilis Catabolite Repression Containing Protein (Crh) Reveals an Unexpected Swapping Domain as an Untertwinned Dimer Authors: Juy, M.R. / Bockmann, A. / Galinier, A. / Penin, F. / Haser, R. #1: Journal: J.Mol.Microbiol.Biotechnol. / Year: 2001 Title: Evidence for a Dimerisation State of the Bacillus subtilis Catabolite Repression repression Hpr-like Protein Crh Authors: Penin, F. / Favier, A. / Montserret, R. / Brutscher, B. / Deutscher, J. / Marion, D. / Galinier, A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1mo1.cif.gz | 90.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1mo1.ent.gz | 74.7 KB | Display | PDB format |
PDBx/mmJSON format | 1mo1.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mo/1mo1 ftp://data.pdbj.org/pub/pdb/validation_reports/mo/1mo1 | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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3 |
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Unit cell |
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-Components
#1: Protein | Mass: 9671.743 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bacillus subtilis (bacteria) / Production host: Escherichia coli (E. coli) / References: UniProt: O06976 #2: Protein | Mass: 9718.639 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bacillus subtilis (bacteria) / Production host: Escherichia coli (E. coli) / References: UniProt: O06976 #3: Chemical | ChemComp-SO4 / #4: Chemical | ChemComp-GOL / #5: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 3.79 Å3/Da / Density % sol: 67 % |
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Crystal grow | Temperature: 273 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: ammonium sulfate, PEG 2000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 273K |
-Data collection
Diffraction | Mean temperature: 100 K | ||||||||||||
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: BM14 / Wavelength: 0.9763,0.9798,0.9801 | ||||||||||||
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Mar 8, 2001 | ||||||||||||
Radiation | Monochromator: Si 111 CHANNEL / Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 1.8→24.75 Å / Num. all: 48746 / Num. obs: 46777 / % possible obs: 96 % / Observed criterion σ(F): 0 / Observed criterion σ(I): -3 / Redundancy: 4.5 % / Biso Wilson estimate: 16.6 Å2 / Rmerge(I) obs: 0.06 / Rsym value: 0.028 / Net I/σ(I): 15.6 | ||||||||||||
Reflection shell | Resolution: 1.8→1.91 Å / Redundancy: 3.3 % / Rmerge(I) obs: 0.15 / Mean I/σ(I) obs: 3.6 / Num. unique all: 7247 / Rsym value: 0.15 / % possible all: 94 |
-Processing
Software |
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Refinement | Method to determine structure: MAD / Resolution: 1.8→24.75 Å / Rfactor Rfree error: 0.004 / Data cutoff high absF: 1471610.97 / Data cutoff high rms absF: 1471610.97 / Data cutoff low absF: 0 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 44.9955 Å2 / ksol: 0.379036 e/Å3 | ||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 21.6 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 1.8→24.75 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.8→1.91 Å / Rfactor Rfree error: 0.011 / Total num. of bins used: 6
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