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Yorodumi- PDB-1mlb: MONOCLONAL ANTIBODY FAB D44.1 RAISED AGAINST CHICKEN EGG-WHITE LY... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1mlb | ||||||
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Title | MONOCLONAL ANTIBODY FAB D44.1 RAISED AGAINST CHICKEN EGG-WHITE LYSOZYME | ||||||
Components |
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Keywords | IMMUNE SYSTEM / IMMUNOGLOBULIN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Mus musculus (house mouse) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.1 Å | ||||||
Authors | Braden, B.C. / Souchon, H. / Eisele, J.-L. / Bentley, G.A. / Bhat, T.N. / Navaza, J. / Poljak, R.J. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1994 Title: Three-dimensional structures of the free and the antigen-complexed Fab from monoclonal anti-lysozyme antibody D44.1. Authors: Braden, B.C. / Souchon, H. / Eisele, J.L. / Bentley, G.A. / Bhat, T.N. / Navaza, J. / Poljak, R.J. #1: Journal: J.Mol.Biol. / Year: 1988 Title: Crystallization and Preliminary X-Ray Diffraction Studies of Two Antigen-Antibody (Lysozyme-Fab) Complexes Authors: Fischmann, T. / Souchon, H. / Riottot, M.-M. / Tello, D. / Poljak, R.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1mlb.cif.gz | 94.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1mlb.ent.gz | 75.6 KB | Display | PDB format |
PDBx/mmJSON format | 1mlb.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ml/1mlb ftp://data.pdbj.org/pub/pdb/validation_reports/ml/1mlb | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO A 8 / 2: CIS PROLINE - PRO A 95 / 3: CIS PROLINE - PRO A 141 / 4: CIS PROLINE - PRO B 150 / 5: CIS PROLINE - PRO B 152 / 6: CIS PROLINE - PRO B 192 |
-Components
#1: Antibody | Mass: 23609.846 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / References: UniProt: P01837 |
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#2: Antibody | Mass: 23215.848 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / References: PIR: PC4202 |
#3: Water | ChemComp-HOH / |
Compound details | VL RESIDUE SER 30 IS IN THE SECOND POSITION OF A II'-TYPE TURN. VL RESIDUE VAL 51 IS THE SECOND ...VL RESIDUE SER 30 IS IN THE SECOND POSITION OF A II'-TYPE TURN. VL RESIDUE VAL 51 IS THE SECOND RESIDUE (I+1) OF A MODIFIED GAMMA TURN (CLASS 3). |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.49 Å3/Da / Density % sol: 50.62 % | ||||||||||||||||||||
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Crystal grow | *PLUS pH: 6 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.5418 Å |
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Detector | Type: SIEMENS / Detector: AREA DETECTOR |
Radiation | Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 26986 / % possible obs: 70 % / Redundancy: 4 % / Rmerge(I) obs: 0.1 |
Reflection | *PLUS Highest resolution: 2.1 Å / Rmerge(I) obs: 0.1 / Num. measured all: 106016 |
-Processing
Software |
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Refinement | Resolution: 2.1→7 Å / σ(F): 2 Details: D44.1 IS CRYSTALLIZED AS THE FAB. CHAIN A INCLUDES THE VL AND CL DOMAINS. CHAIN B INCLUDES THE VH AND CH1 DOMAINS. CHAIN B RESIDUES 131 - 136, ASP 217 AND THE C-TERMINAL CYS 218 (ALL IN THE ...Details: D44.1 IS CRYSTALLIZED AS THE FAB. CHAIN A INCLUDES THE VL AND CL DOMAINS. CHAIN B INCLUDES THE VH AND CH1 DOMAINS. CHAIN B RESIDUES 131 - 136, ASP 217 AND THE C-TERMINAL CYS 218 (ALL IN THE CH1 DOMAIN) HAVE NO ELECTRON DENSITY AND, THEREFORE, THE ATOMIC POSITIONS FOR THESE RESIDUES SHOULD BE CONSIDERED ARBITRARY.
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Displacement parameters | Biso mean: 27.1 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.1→7 Å
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Refine LS restraints |
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