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- PDB-1mco: THREE-DIMENSIONAL STRUCTURE OF A HUMAN IMMUNOGLOBULIN WITH A HING... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1mco | |||||||||
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Title | THREE-DIMENSIONAL STRUCTURE OF A HUMAN IMMUNOGLOBULIN WITH A HINGE DELETION | |||||||||
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Function / homology | ![]() ![]() ![]() ![]() | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Guddat, L.W. / Edmundson, A.B. | |||||||||
![]() | ![]() Title: Three-dimensional structure of a human immunoglobulin with a hinge deletion. Authors: Guddat, L.W. / Herron, J.N. / Edmundson, A.B. #1: ![]() Title: Three-Dimensional Structure of the Mcg Igg1 Immunoglobulin Authors: Rajan, S.S. / Ely, K.R. / Abola, E.E. / Wood, M.K. / Colman, P.M. / Athay, R.J. / Edmundson, A.B. #2: ![]() Title: Conformational Flexibility in Immunoglobulins Authors: Edmundson, A.B. / Ely, K.R. / Abola, E.E. #3: ![]() Title: A Crystallographic Investigation of a Human Igg Immunoglobulin Authors: Edmundson, A.B. / Wood, M.K. / Schiffer, M. / Hardman, K.D. / Ainsworth, C.F. / Ely, K.R. | |||||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 126.8 KB | Display | ![]() |
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PDB format | ![]() | 95.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Atom site foot note | 1: TYR L 144 - PRO L 145 OMEGA ANGLE = 90.421 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 2: PHE H 150 - PRO H 151 OMEGA ANGLE = 235.747 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 3: GLN H 152 - PRO H 153 OMEGA ANGLE = 247.018 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 4: TYR H 358 - PRO H 359 OMEGA ANGLE = 278.722 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 5: PRO H 380 - PRO H 381 OMEGA ANGLE = 221.018 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION |
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Components
#1: Antibody | Mass: 22835.035 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() |
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#2: Antibody | Mass: 46898.949 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() |
#3: Polysaccharide | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D- ...N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-L-gulopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose![]() Source method: isolated from a genetically manipulated source |
Sequence details | THE FOLLOWING TABLE MAY BE USED TO RELATE THE ENTRIES SEQUENCE NUMBERING TO THE NUMBERING SYSTEM OF ...THE FOLLOWING TABLE MAY BE USED TO RELATE THE ENTRIES SEQUENCE NUMBERING TO THE NUMBERING SYSTEM OF E.KABAT (E.A.KABAT,T.T.WU,M.REID-MILLER,H.M.PERRY,K.S.GOTTESMAN, SEQUENCES OF PROTEINS OF IMMUNOLOGI |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.25 Å3/Da / Density % sol: 62.18 % | ||||||||||||||||||||
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Crystal grow![]() | *PLUS Temperature: 20 ℃ / pH: 8 / Method: unknown / Details: Edmundson, A.B., (1970) J.Biol.Chem., 245, 2763. | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 3.2 Å / Lowest resolution: 9999 Å / Num. all: 15365 / Num. obs: 14525 / % possible obs: 94.5 % / Num. measured all: 43520 / Rmerge(I) obs: 0.1479 |
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Processing
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Refinement | Rfactor Rwork![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 3.2 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 3.2 Å / Rfactor obs: 0.232 / Lowest resolution: 6 Å / Num. reflection obs: 11875 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d / Dev ideal: 0.027 |