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- PDB-1kzt: Structure of Human Immunodeficiency Virus Type 1 Vpr(34-51) Pepti... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1kzt | ||||||
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Title | Structure of Human Immunodeficiency Virus Type 1 Vpr(34-51) Peptide in DPC Micelle Containing Aqueous Solution | ||||||
![]() | Vpr PROTEIN | ||||||
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Function / homology | ![]() symbiont-mediated arrest of host cell cycle during G2/M transition / monoatomic ion transmembrane transport / : / ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Method | ![]() ![]() | ||||||
![]() | Engler, A. / Stangler, T. / Willbold, D. | ||||||
![]() | ![]() Title: Structure of human immunodeficiency virus type 1 Vpr(34-51) peptide in micelle containing aqueous solution. Authors: Engler, A. / Stangler, T. / Willbold, D. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 111.5 KB | Display | ![]() |
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PDB format | ![]() | 87.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 2271.578 Da / Num. of mol.: 1 / Fragment: RESIDUES 34-51 / Source method: obtained synthetically Details: THIS PEPTIDE WAS Chemically synthesized. IT IS NATURALLY FOUND IN human immunodeficiency virus type 1 (New York-5 isolate) (HIV-1). References: UniProt: P12520 |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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NMR experiment | Type![]() ![]() |
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Sample preparation
Details | Contents: 2mM Vpr(34-51); 100mM Dodecylphosphocholine d38; 90% H2O, 10% D2O Solvent system: 90% H2O/10% D2O |
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Sample conditions | Ionic strength: 100mM / pH: 4.5 / Pressure: ambient / Temperature: 298 K |
Crystal grow![]() | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model![]() |
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Processing
NMR software |
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Refinement | Method: ![]() Details: structures were calculated using floating chirality. | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations, structures with the lowest energy Conformers calculated total number: 97 / Conformers submitted total number: 20 |