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- PDB-1khd: Crystal Structure Analysis of the anthranilate phosphoribosyltran... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1khd | ||||||
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Title | Crystal Structure Analysis of the anthranilate phosphoribosyltransferase from Erwinia carotovora at 1.9 resolution (current name, Pectobacterium carotovorum) | ||||||
![]() | Anthranilate phosphoribosyltransferase![]() | ||||||
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Function / homology | ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Kim, C. / Xuong, N.-H. / Edwards, S. / Madhusudan / Yee, M.-C. / Spraggon, G. / Mills, S.E. | ||||||
![]() | ![]() Title: The Crystal Structure of Anthranilate Phosphoribosyltransferase from the Enterobacterium Pectobacterium carotovorum Authors: Kim, C. / Xuong, N.-H. / Edwards, S. / Madhusudan / Yee, M.-C. / Spraggon, G. / Mills, S.E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 264.4 KB | Display | ![]() |
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PDB format | ![]() | 213.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 1kgzSC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 37057.117 Da / Num. of mol.: 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() References: UniProt: Q8VP84, ![]() #2: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.14 Å3/Da / Density % sol: 42.43 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow![]() | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 6.5 Details: PEG 3000, MnCl2, glutamine, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 200 K |
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Diffraction source | Source: ![]() |
Detector | Type: MARRESEARCH / Detector: AREA DETECTOR / Date: Jun 27, 2001 |
Radiation | Monochromator: YALE MIRRORS / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.86→25 Å / Num. all: 107405 / Num. obs: 99609 / % possible obs: 92.7 % / Observed criterion σ(F): 2 / Observed criterion σ(I): 2 / Redundancy: 25 % / Rmerge(I) obs: 0.063 / Rsym value: 0.06 / Net I/σ(I): 38.6 |
Reflection | *PLUS Highest resolution: 1.86 Å / Lowest resolution: 50 Å / % possible obs: 92 % / Redundancy: 25 % / Num. measured all: 107405 / Rmerge(I) obs: 0.063 |
Reflection shell | *PLUS Rmerge(I) obs: 0.372 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: PDB ENTRY 1KGZ Resolution: 1.86→25 Å / σ(F): 2 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 1.86→25 Å
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Refinement | *PLUS Highest resolution: 1.86 Å / Lowest resolution: 50 Å / Rfactor Rfree![]() ![]() | ||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||
Refine LS restraints | *PLUS
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