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Open data
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Basic information
Entry | Database: PDB / ID: 1jse | ||||||
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Title | FULL-MATRIX LEAST-SQUARES REFINEMENT OF TURKEY LYSOZYME | ||||||
![]() | LYSOZYME![]() | ||||||
![]() | ![]() ![]() | ||||||
Function / homology | ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Harata, K. / Abe, Y. / Muraki, M. | ||||||
![]() | ![]() Title: Full-matrix least-squares refinement of lysozymes and analysis of anisotropic thermal motion. Authors: Harata, K. / Abe, Y. / Muraki, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 37.4 KB | Display | ![]() |
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PDB format | ![]() | 28.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 1jsfC ![]() 1lz3 S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | ![]() Mass: 14228.105 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) ![]() ![]() ![]() ![]() |
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#2: Chemical | ChemComp-POL / ![]() |
#3: Water | ChemComp-HOH / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.91 Å3/Da / Density % sol: 35.6 % | ||||||||||||||||||||||||
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Crystal grow![]() | pH: 4.2 Details: 2.2M AMMONIUM SULFATE SOLUTION AT PH 4.2 CONTAINING 10% 1-PROPANOL AND 4% PROTEIN | ||||||||||||||||||||||||
Crystal | *PLUS | ||||||||||||||||||||||||
Crystal grow | *PLUS Method: batch method | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 285 K |
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Diffraction source | Source: ![]() |
Detector | Type: ENRAF-NONIUS / Detector: AREA DETECTOR / Date: Jan 1, 1996 |
Radiation | Monochromator: GRAPHITE(002) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.12→22.3 Å / Num. obs: 36320 / % possible obs: 86.1 % / Observed criterion σ(I): 0 / Redundancy: 3.1 % / Rmerge(I) obs: 0.043 / Net I/σ(I): 5.3 |
Reflection shell | Resolution: 1.12→1.14 Å / Rmerge(I) obs: 0.227 / % possible all: 53.3 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: PDB ENTRY 1LZ3 ![]() 1lz3 Resolution: 1.12→22.3 Å / Num. parameters: 10631 / Num. restraintsaints: 12784 / Cross valid method: FREE R / σ(F): 0
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Solvent computation | Solvent model: SWAT | |||||||||||||||||||||||||||||||||
Refine analyze | Num. disordered residues: 5 | |||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.12→22.3 Å
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Refine LS restraints |
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Software | *PLUS Name: SHELXL-93 / Classification: refinement | |||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor Rfree![]() ![]() | |||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |