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Yorodumi- PDB-1jhl: THREE-DIMENSIONAL STRUCTURE OF A HETEROCLITIC ANTIGEN-ANTIBODY CR... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1jhl | ||||||
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Title | THREE-DIMENSIONAL STRUCTURE OF A HETEROCLITIC ANTIGEN-ANTIBODY CROSS-REACTION COMPLEX | ||||||
Components |
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Keywords | COMPLEX(ANTIBODY-ANTIGEN) | ||||||
Function / homology | Function and homology information metabolic process / lysozyme / lysozyme activity / killing of cells of another organism / defense response to bacterium / extracellular region Similarity search - Function | ||||||
Biological species | Mus musculus (house mouse) Phasianus colchicus (Ring-necked pheasant) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.4 Å | ||||||
Authors | Chitarra, V. / Alzari, P.M. / Bentley, G.A. / Bhat, T.N. / Eisele, J.-L. / Poljak, R.J. | ||||||
Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 1993 Title: Three-dimensional structure of a heteroclitic antigen-antibody cross-reaction complex. Authors: Chitarra, V. / Alzari, P.M. / Bentley, G.A. / Bhat, T.N. / Eisele, J.L. / Houdusse, A. / Lescar, J. / Souchon, H. / Poljak, R.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1jhl.cif.gz | 78.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1jhl.ent.gz | 60.3 KB | Display | PDB format |
PDBx/mmJSON format | 1jhl.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/jh/1jhl ftp://data.pdbj.org/pub/pdb/validation_reports/jh/1jhl | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: RESIDUES PRO L 8 AND PRO L 95 ARE CIS PROLINES. |
-Components
#1: Antibody | Mass: 11841.174 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / References: GenBank: 196740 |
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#2: Antibody | Mass: 13004.309 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) |
#3: Protein | Mass: 14276.205 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Phasianus colchicus (Ring-necked pheasant) References: UniProt: P00702 |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 3.48 Å3/Da / Density % sol: 64.61 % | |||||||||||||||
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Crystal grow | *PLUS pH: 8.5 / Method: vapor diffusion, hanging drop | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.4 Å / Num. obs: 19835 / % possible obs: 95 % / Num. measured all: 94553 / Rmerge(I) obs: 0.139 |
-Processing
Software |
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Refinement | Resolution: 2.4→7 Å / σ(F): 3 /
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Refinement step | Cycle: LAST / Resolution: 2.4→7 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2.4 Å / Lowest resolution: 7 Å / Num. reflection obs: 16483 / σ(F): 3 / Rfactor obs: 0.214 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d / Dev ideal: 4 |