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Yorodumi- PDB-1i4g: Crystal structure of Staphylococcal enterotoxin A mutant H187A wi... -
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-Basic information
Entry | Database: PDB / ID: 1i4g | ||||||
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Title | Crystal structure of Staphylococcal enterotoxin A mutant H187A with reduced Zn2+ affinity | ||||||
Components | ENTEROTOXIN TYPE A | ||||||
Keywords | TOXIN / beta-grasp / beta-barrel | ||||||
Function / homology | Function and homology information MHC class II protein binding / toxin activity / extracellular region / metal ion binding Similarity search - Function | ||||||
Biological species | Staphylococcus aureus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 2.1 Å | ||||||
Authors | Hakansson, M. / Antonsson, P. / Bjork, P. / Svensson, L.A. | ||||||
Citation | Journal: J.Biol.Inorg.Chem. / Year: 2001 Title: Cooperative zinc binding in a staphylococcal enterotoxin A mutant mimics the SEA-MHC class II interaction Authors: Hakansson, M. / Antonsson, P. / Bjork, P. / Svensson, L.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1i4g.cif.gz | 109.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1i4g.ent.gz | 83.4 KB | Display | PDB format |
PDBx/mmJSON format | 1i4g.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/i4/1i4g ftp://data.pdbj.org/pub/pdb/validation_reports/i4/1i4g | HTTPS FTP |
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-Related structure data
Related structure data | 1i4hC 1esfS C: citing same article (ref.) S: Starting model for refinement |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
#1: Protein | Mass: 27063.236 Da / Num. of mol.: 2 / Mutation: H187A Source method: isolated from a genetically manipulated source Source: (gene. exp.) Staphylococcus aureus (bacteria) / Plasmid: PKP889 / Production host: Escherichia coli (E. coli) / Strain (production host): UL635 / References: UniProt: P0A0L2 #2: Chemical | ChemComp-ZN / | #3: Chemical | ChemComp-SO4 / | #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.49 Å3/Da / Density % sol: 46 % | ||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 298 K / Method: evaporation / pH: 6 Details: PEG 8000, lithium sulphate, pipes, pH 6.0, EVAPORATION, temperature 298K | ||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS pH: 8 / Method: vapor diffusionDetails: drop was mixed with an equal volume of reservoir solution | ||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 298 K |
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Diffraction source | Source: ROTATING ANODE / Type: RIGAKU RU200 / Wavelength: 1.5418 Å |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Jul 17, 1996 |
Radiation | Monochromator: graphite / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.1→20 Å / Num. all: 30860 / Num. obs: 30705 / % possible obs: 95.2 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 5.1 % / Biso Wilson estimate: 39.6 Å2 / Rmerge(I) obs: 0.07 / Net I/σ(I): 14.2 |
Reflection shell | Resolution: 2.1→2.3 Å / Redundancy: 3.4 % / Rmerge(I) obs: 0.25 / Mean I/σ(I) obs: 1.6 / Num. unique all: 7022 / % possible all: 92.7 |
Reflection | *PLUS Num. measured all: 158044 |
Reflection shell | *PLUS % possible obs: 92.7 % |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: pdb entry 1ESF Resolution: 2.1→20 Å / Isotropic thermal model: Isotropic / Cross valid method: THROUGHOUT / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber
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Displacement parameters | Biso mean: 39.3 Å2 | ||||||||||||||||||||
Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.1→20 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Version: 3.1 / Classification: refinement | ||||||||||||||||||||
Refine LS restraints | *PLUS
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