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Yorodumi- PDB-1hxn: 1.8 ANGSTROMS CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF RABBI... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1hxn | ||||||
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Title | 1.8 ANGSTROMS CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF RABBIT SERUM HEMOPEXIN | ||||||
Components | HEMOPEXIN | ||||||
Keywords | BINDING PROTEIN / HEME | ||||||
Function / homology | Function and homology information heme transmembrane transporter activity / intracellular iron ion homeostasis / heme binding / extracellular region / metal ion binding Similarity search - Function | ||||||
Biological species | Oryctolagus cuniculus (rabbit) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.8 Å | ||||||
Authors | Faber, H.R. / Baker, E.N. | ||||||
Citation | Journal: Structure / Year: 1995 Title: 1.8 A crystal structure of the C-terminal domain of rabbit serum haemopexin. Authors: Faber, H.R. / Groom, C.R. / Baker, H.M. / Morgan, W.T. / Smith, A. / Baker, E.N. #1: Journal: J.Mol.Biol. / Year: 1993 Title: Crystallization of the C-Terminal Domain of Rabbit Serum Hemopexin Authors: Baker, H.M. / Norris, G.E. / Morgan, W.T. / Smith, A. / Baker, E.N. #2: Journal: J.Biol.Chem. / Year: 1993 Title: Identification of the Histidine Residues of Hemopexin that Coordinate with Heme-Iron and of a Receptor-Binding Region Authors: Morgan, W.T. / Muster, P. / Tatum, F. / Kao, S.-M. / Alam, J. / Smith, A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1hxn.cif.gz | 56.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1hxn.ent.gz | 40 KB | Display | PDB format |
PDBx/mmJSON format | 1hxn.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hx/1hxn ftp://data.pdbj.org/pub/pdb/validation_reports/hx/1hxn | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO 314 |
-Components
#1: Protein | Mass: 24649.850 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Oryctolagus cuniculus (rabbit) / Tissue: SERUM / References: UniProt: P20058 | ||||||||
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#2: Chemical | ChemComp-PO4 / | ||||||||
#3: Chemical | #4: Chemical | ChemComp-CL / | #5: Water | ChemComp-HOH / | Nonpolymer details | RESIDUES 2 AND 4 ARE PRESUMED TO BE SODIUM IONS BUT WOULD BE INDISTINGUISHABLE FROM MAGNESIUM IONS. ...RESIDUES 2 AND 4 ARE PRESUMED TO BE SODIUM IONS BUT WOULD BE INDISTINGU | Sequence details | THE SEQUENCE IS GIVEN FOR THE C-TERMINAL PROTEOLYTIC FRAGMENT OF RABBIT SERUM HEMOPEXIN. THIS ...THE SEQUENCE IS GIVEN FOR THE C-TERMINAL PROTEOLYTI | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.24 Å3/Da / Density % sol: 45.01 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 4 ℃ / pH: 5.25 / Method: vapor diffusion, hanging drop | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.8 Å / Num. obs: 16990 / % possible obs: 81 % / Observed criterion σ(I): 1.5 / Num. measured all: 51808 / Rmerge(I) obs: 0.04 |
-Processing
Software | Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.8→20 Å / σ(F): 1 /
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Refinement step | Cycle: LAST / Resolution: 1.8→20 Å
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Refine LS restraints |
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Refinement | *PLUS Lowest resolution: 20 Å / Num. reflection obs: 16971 / Rfactor obs: 0.176 | ||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |