+Open data
-Basic information
Entry | Database: PDB / ID: 1hwq | ||||||
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Title | SOLUTION STRUCTURE OF THE VS RIBOZYME SUBSTRATE STEM-LOOP | ||||||
Components | VS RIBOZYME SUBSTRATE RNA | ||||||
Keywords | RNA / VS RIBOZYME / STEM-LOOP / TANDEM GA / PROTONATED ADENINE / A+C BASE PAIR | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Flinders, J.C. / Dieckmann, T. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 2001 Title: A pH controlled conformational switch in the cleavage site of the VS ribozyme substrate RNA. Authors: Flinders, J. / Dieckmann, T. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1hwq.cif.gz | 366.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1hwq.ent.gz | 324.8 KB | Display | PDB format |
PDBx/mmJSON format | 1hwq.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hw/1hwq ftp://data.pdbj.org/pub/pdb/validation_reports/hw/1hwq | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 9705.832 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: RNA samples were transcribed from synthetic DNA templates using T7 RNA polymerase. |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: These structures were calculated using a total of 568 restraints; including 335 NOE-derived distance constraints, 158 dihedral angle restraints, 12 planarity restraints, and 63 H-bond distance restraints. | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 20 |