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Yorodumi- PDB-1hof: NMR STRUCTURE OF T3-I2, A 32 RESIDUE PEPTIDE FROM THE ALPHA-2A AD... -
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-Basic information
Entry | Database: PDB / ID: 1hof | ||||||
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Title | NMR STRUCTURE OF T3-I2, A 32 RESIDUE PEPTIDE FROM THE ALPHA-2A ADRENERGIC RECEPTOR | ||||||
Components | ALPHA-2A ADRENERGIC RECEPTOR | ||||||
Keywords | MEMBRANE PROTEIN / HELIX-LINKER-HELIX | ||||||
Function / homology | Function and homology information negative regulation of uterine smooth muscle contraction / adenylate cyclase-inhibiting adrenergic receptor signaling pathway / phospholipase C-activating adrenergic receptor signaling pathway / alpha2-adrenergic receptor activity / Adrenaline signalling through Alpha-2 adrenergic receptor / alpha-2C adrenergic receptor binding / receptor transactivation / epinephrine binding / alpha-1B adrenergic receptor binding / negative regulation of norepinephrine secretion ...negative regulation of uterine smooth muscle contraction / adenylate cyclase-inhibiting adrenergic receptor signaling pathway / phospholipase C-activating adrenergic receptor signaling pathway / alpha2-adrenergic receptor activity / Adrenaline signalling through Alpha-2 adrenergic receptor / alpha-2C adrenergic receptor binding / receptor transactivation / epinephrine binding / alpha-1B adrenergic receptor binding / negative regulation of norepinephrine secretion / negative regulation of calcium ion transmembrane transporter activity / negative regulation of epinephrine secretion / heterotrimeric G-protein binding / dopaminergic synapse / negative regulation of calcium ion-dependent exocytosis / Surfactant metabolism / positive regulation of potassium ion transport / thermoception / fear response / thioesterase binding / negative regulation of insulin secretion involved in cellular response to glucose stimulus / norepinephrine binding / Adrenoceptors / intestinal absorption / positive regulation of membrane protein ectodomain proteolysis / positive regulation of epidermal growth factor receptor signaling pathway / positive regulation of wound healing / adrenergic receptor signaling pathway / activation of protein kinase activity / negative regulation of calcium ion transport / Rho protein signal transduction / regulation of vasoconstriction / negative regulation of insulin secretion / GABA-ergic synapse / negative regulation of lipid catabolic process / axon terminus / presynaptic active zone membrane / adenylate cyclase-activating adrenergic receptor signaling pathway / cellular response to hormone stimulus / presynaptic modulation of chemical synaptic transmission / adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway / activation of protein kinase B activity / female pregnancy / positive regulation of cytokine production / postsynaptic density membrane / positive regulation of MAP kinase activity / adenylate cyclase-activating G protein-coupled receptor signaling pathway / platelet activation / Adrenaline,noradrenaline inhibits insulin secretion / G alpha (z) signalling events / vasodilation / glucose homeostasis / G alpha (i) signalling events / actin cytoskeleton organization / basolateral plasma membrane / Ras protein signal transduction / DNA replication / positive regulation of MAPK cascade / receptor complex / positive regulation of cell migration / G protein-coupled receptor signaling pathway / protein heterodimerization activity / neuronal cell body / glutamatergic synapse / positive regulation of cell population proliferation / protein kinase binding / protein homodimerization activity / plasma membrane / cytoplasm Similarity search - Function | ||||||
Method | SOLUTION NMR / SIMULATED ANNEALING IN TORSION ANGLE SPACE | ||||||
Authors | Chung, D.A. / Zuiderweg, E.R. / Neubig, R.R. | ||||||
Citation | Journal: Biochemistry / Year: 2002 Title: NMR structure of the second intracellular loop of the alpha 2A adrenergic receptor: evidence for a novel cytoplasmic helix. Authors: Chung, D.A. / Zuiderweg, E.R. / Fowler, C.B. / Soyer, O.S. / Mosberg, H.I. / Neubig, R.R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1hof.cif.gz | 216.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1hof.ent.gz | 179.8 KB | Display | PDB format |
PDBx/mmJSON format | 1hof.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ho/1hof ftp://data.pdbj.org/pub/pdb/validation_reports/ho/1hof | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3798.379 Da / Num. of mol.: 1 / Fragment: SECOND INTRACELLULAR LOOP (RESIDUES 118-149) / Source method: obtained synthetically Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THE PEPTIDE OCCURS NATURALLY IN HOMO SAPIENS (HUMAN). References: UniProt: P08913 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample conditions |
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-NMR measurement
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 800 MHz |
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-Processing
NMR software |
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Refinement | Method: SIMULATED ANNEALING IN TORSION ANGLE SPACE / Software ordinal: 1 | |||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 100 / Conformers submitted total number: 20 |