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- PDB-1goh: NOVEL THIOETHER BOND REVEALED BY A 1.7 ANGSTROMS CRYSTAL STRUCTUR... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1goh | |||||||||
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Title | NOVEL THIOETHER BOND REVEALED BY A 1.7 ANGSTROMS CRYSTAL STRUCTURE OF GALACTOSE OXIDASE | |||||||||
![]() | GALACTOSE OXIDASE![]() | |||||||||
![]() | OXIDOREDUCTASE(OXYGEN(A)) | |||||||||
Function / homology | ![]() ![]() ![]() ![]() Similarity search - Function | |||||||||
Biological species | ![]() | |||||||||
Method | ![]() | |||||||||
![]() | Ito, N. / Phillips, S.E.V. / Knowles, P.F. | |||||||||
![]() | ![]() Title: Novel thioether bond revealed by a 1.7 A crystal structure of galactose oxidase. Authors: Ito, N. / Phillips, S.E. / Stevens, C. / Ogel, Z.B. / McPherson, M.J. / Keen, J.N. / Yadav, K.D. / Knowles, P.F. #1: ![]() Title: The Crystal Structure of a Free Radical Enzyme, Galactose Oxidase Authors: Ito, N. / Phillips, S.E.V. / Yadav, K.K.S. / Knowles, P.F. #2: ![]() Title: Galactose Oxidase of Dactylium Dendroides: Gene Cloning and Sequence Analysis Authors: McPherson, M.J. / Ogel, Z.B. / Stevens, C. / Yadav, K.D.S. / Keen, J.M. / Knowles, P.F. | |||||||||
History |
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Remark 700 | SHEET THE SHEET PRESENTED AS *S9* ON SHEET RECORDS BELOW IS ACTUALLY A SEVEN-STRANDED BETA-BARREL. ...SHEET THE SHEET PRESENTED AS *S9* ON SHEET RECORDS BELOW IS ACTUALLY A SEVEN-STRANDED BETA-BARREL. THIS IS REPRESENTED BY AN EIGHT-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. DOMAIN 3 (RESIDUES 553 - 639) HAS A VERY COMPLICATED HYDROGEN BONDING NETWORK WHICH IS DIFFICULT TO DESCRIBE. IN THE SHEET RECORDS BELOW, THIS IS SIMPLIFIED BY REGARDING SEVERAL PAIRS OF BETA-STRANDS AS ONE. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 136.8 KB | Display | ![]() |
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PDB format | ![]() | 107.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Atom site foot note | 1: CIS PROLINE - PRO 52 / 2: CIS PROLINE - PRO 163 / 3: CIS PROLINE - PRO 350 |
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Components
#1: Protein | ![]() Mass: 68578.594 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() References: UniProt: Q01745, UniProt: P0CS93*PLUS, ![]() |
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#2: Chemical | ChemComp-NA / |
#3: Water | ChemComp-HOH / ![]() |
Source details | THERE IS SOME UNCERTAINT |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.45 Å3/Da / Density % sol: 49.76 % | |||||||||||||||
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Crystal grow![]() | *PLUS Method: unknown | |||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
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Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 2.2→10 Å / σ(F): 0 /
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Refinement step | Cycle: LAST / Resolution: 2.2→10 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 2.2 Å / Lowest resolution: 10 Å / Num. reflection all: 27365 / σ(F): 0 / Rfactor all![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |