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- PDB-1gm0: A Form of the Pheromone-Binding Protein from Bombyx mori -

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Basic information

Entry
Database: PDB / ID: 1gm0
TitleA Form of the Pheromone-Binding Protein from Bombyx mori
ComponentsPHEROMONE-BINDING PROTEIN
KeywordsTRANSPORT PROTEIN / INSECT ODORANT-BINDING PROTEIN / PH-DEPENDENT CONFORMATION / HELICAL INSERTION
Function / homology
Function and homology information


response to pheromone / pheromone binding
Similarity search - Function
Odorant/pheromone binding protein, Lepidoptera / Pheromone/general odorant binding protein domain / Insect pheromone/odorant binding protein domains. / Pheromone/general odorant binding protein / PBP/GOBP family / Pheromone/general odorant binding protein superfamily / Recoverin; domain 1 / Orthogonal Bundle / Mainly Alpha
Similarity search - Domain/homology
Pheromone-binding protein
Similarity search - Component
Biological speciesBOMBYX MORI (domestic silkworm)
MethodSOLUTION NMR
AuthorsHorst, R. / Damberger, F. / Guntert, P. / Luginbuhl, P. / Nikonova, L. / Peng, G. / Leal, W.S. / Wuthrich, K.
CitationJournal: Proc.Natl.Acad.Sci.USA / Year: 2001
Title: NMR Structure Reveals Novel Intramolecular Regulation Mechanism for Pheromone-Binding and Release
Authors: Horst, R. / Damberger, F. / Luginbuhl, P. / Guntert, P. / Peng, G. / Nikonova, L. / Leal, W.S. / Wuthrich, K.
History
DepositionSep 5, 2001Deposition site: PDBE / Processing site: PDBE
Revision 1.0Nov 30, 2001Provider: repository / Type: Initial release
Revision 1.1May 8, 2011Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Jan 17, 2018Group: Database references / Structure summary / Category: citation / struct / Item: _citation.page_last / _struct.title

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: PHEROMONE-BINDING PROTEIN


Theoretical massNumber of molelcules
Total (without water)15,9031
Polymers15,9031
Non-polymers00
Water0
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)20 / -
RepresentativeModel #1

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Components

#1: Protein PHEROMONE-BINDING PROTEIN


Mass: 15903.138 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) BOMBYX MORI (domestic silkworm) / Production host: ESCHERICHIA COLI (E. coli) / References: UniProt: P34174

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR
NMR experimentType: NOESY

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Sample preparation

Sample conditionspH: 4.5 / Temperature: 293 K
Crystal grow
*PLUS
Method: other / Details: NMR

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NMR measurement

NMR spectrometerType: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 750 MHz

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Processing

NMR software
NameDeveloperClassification
OPALLUGINBUHL,GUNTERT,BILLETER,WUTHRICHrefinement
Cstructure solution
ID/DYANAstructure solution
NMR ensembleConformers submitted total number: 20

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