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Yorodumi- PDB-1gbr: ORIENTATION OF PEPTIDE FRAGMENTS FROM SOS PROTEINS BOUND TO THE N... -
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-Basic information
Entry | Database: PDB / ID: 1gbr | ||||||
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Title | ORIENTATION OF PEPTIDE FRAGMENTS FROM SOS PROTEINS BOUND TO THE N-TERMINAL SH3 DOMAIN OF GRB2 DETERMINED BY NMR SPECTROSCOPY | ||||||
Components |
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Keywords | SIGNAL TRANSDUCTION PROTEIN | ||||||
Function / homology | Function and homology information guanyl-nucleotide exchange factor activity => GO:0005085 / Signalling to RAS / Activated NTRK2 signals through FRS2 and FRS3 / SHC1 events in ERBB4 signaling / GRB2 events in ERBB2 signaling / EGFR Transactivation by Gastrin / SHC-mediated cascade:FGFR3 / SHC-mediated cascade:FGFR4 / SHC-mediated cascade:FGFR1 / SHC-mediated cascade:FGFR2 ...guanyl-nucleotide exchange factor activity => GO:0005085 / Signalling to RAS / Activated NTRK2 signals through FRS2 and FRS3 / SHC1 events in ERBB4 signaling / GRB2 events in ERBB2 signaling / EGFR Transactivation by Gastrin / SHC-mediated cascade:FGFR3 / SHC-mediated cascade:FGFR4 / SHC-mediated cascade:FGFR1 / SHC-mediated cascade:FGFR2 / MET activates PI3K/AKT signaling / PI-3K cascade:FGFR3 / PI-3K cascade:FGFR4 / SHC-related events triggered by IGF1R / Signal regulatory protein family interactions / PI-3K cascade:FGFR1 / PI-3K cascade:FGFR2 / SOS-mediated signalling / : / FRS-mediated FGFR3 signaling / FRS-mediated FGFR4 signaling / MET activates RAS signaling / MET activates PTPN11 / Costimulation by the CD28 family / FRS-mediated FGFR1 signaling / FRS-mediated FGFR2 signaling / PI3K events in ERBB2 signaling / Tie2 Signaling / GRB2 events in EGFR signaling / SHC1 events in EGFR signaling / Interleukin-15 signaling / FLT3 Signaling / CD28 dependent Vav1 pathway / MET activates RAP1 and RAC1 / RHOU GTPase cycle / Signaling by CSF3 (G-CSF) / MET receptor recycling / NCAM signaling for neurite out-growth / Erythropoietin activates RAS / Regulation of KIT signaling / GAB1 signalosome / Role of LAT2/NTAL/LAB on calcium mobilization / PI3K Cascade / Negative regulation of FGFR3 signaling / Negative regulation of FGFR4 signaling / anatomical structure formation involved in morphogenesis / Downstream signal transduction / Negative regulation of FGFR1 signaling / Negative regulation of FGFR2 signaling / Spry regulation of FGF signaling / Insulin receptor signalling cascade / FCERI mediated MAPK activation / Negative regulation of MET activity / lymphocyte homeostasis / Signal attenuation / RHO GTPases Activate WASPs and WAVEs / NRAGE signals death through JNK / Signaling by SCF-KIT / EGFR downregulation / GRB2:SOS provides linkage to MAPK signaling for Integrins / guanyl-nucleotide exchange factor adaptor activity / FCERI mediated Ca+2 mobilization / Grb2-EGFR complex / RAF/MAP kinase cascade / Interleukin receptor SHC signaling / G alpha (12/13) signalling events / PIP3 activates AKT signaling / regulation of pro-B cell differentiation / Antigen activates B Cell Receptor (BCR) leading to generation of second messengers / Regulation of signaling by CBL / Regulation of actin dynamics for phagocytic cup formation / Cargo recognition for clathrin-mediated endocytosis / PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling / branching involved in labyrinthine layer morphogenesis / Clathrin-mediated endocytosis / RET signaling / COP9 signalosome / neurotrophin TRKA receptor binding / vesicle membrane / regulation of T cell differentiation in thymus / transmembrane receptor protein tyrosine kinase adaptor activity / positive regulation of small GTPase mediated signal transduction / DAP12 signaling / epidermal growth factor receptor binding / small GTPase-mediated signal transduction / positive regulation of actin filament polymerization / regulation of T cell proliferation / ERBB2-ERBB3 signaling pathway / endodermal cell differentiation / regulation of MAPK cascade / B cell homeostasis / insulin receptor substrate binding / fibroblast growth factor receptor signaling pathway / signal transduction in response to DNA damage / Schwann cell development / myelination / phosphotyrosine residue binding / ephrin receptor binding / guanyl-nucleotide exchange factor activity / insulin-like growth factor receptor signaling pathway Similarity search - Function | ||||||
Biological species | Mus musculus (house mouse) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Wittekind, M. / Mapelli, C. / Farmer, B.T. / Suen, K.-L. / Goldfarb, V. / Tsao, J. / Lavoie, T. / Barbacid, M. / Meyers, C.A. / Mueller, L. | ||||||
Citation | Journal: Biochemistry / Year: 1994 Title: Orientation of peptide fragments from Sos proteins bound to the N-terminal SH3 domain of Grb2 determined by NMR spectroscopy. Authors: Wittekind, M. / Mapelli, C. / Farmer 2nd., B.T. / Suen, K.L. / Goldfarb, V. / Tsao, J. / Lavoie, T. / Barbacid, M. / Meyers, C.A. / Mueller, L. #1: Journal: Mol.Cell.Biol. / Year: 1993 Title: Molecular Cloning of the Mouse Grb2 Gene: Differential Interaction of the Grb2 Adaptor Protein with Epidermal Growth Factor and Nerve Growth Factor Receptors Authors: Suen, K.-L. / Bustelo, X.R. / Pawson, T. / Barbacid, M. #2: Journal: Proc.Natl.Acad.Sci.USA / Year: 1992 Title: Identification of Murine Homologues of the Drosophila Son of Sevenless Gene: Potential Activators of Ras Authors: Bowtell, D. / Fu, P. / Simon, M. / Senior, P. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1gbr.cif.gz | 819.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1gbr.ent.gz | 683.8 KB | Display | PDB format |
PDBx/mmJSON format | 1gbr.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/gb/1gbr ftp://data.pdbj.org/pub/pdb/validation_reports/gb/1gbr | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 8454.495 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / Gene: MOUSE GRB2 / Plasmid: PGTX-2T (PHARMACIA) / Species (production host): Escherichia coli / Production host: Escherichia coli BL21 (bacteria) / Strain (production host): BL21 / References: UniProt: Q60631 |
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#2: Protein/peptide | Mass: 1771.150 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mus musculus (house mouse) / References: UniProt: Q02384 |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Processing
Software |
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NMR software | Name: X-PLOR / Developer: BRUNGER / Classification: refinement | ||||||||
NMR ensemble | Conformers submitted total number: 29 |