+Open data
-Basic information
Entry | Database: PDB / ID: 1fos | ||||||
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Title | TWO HUMAN C-FOS:C-JUN:DNA COMPLEXES | ||||||
Components |
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Keywords | TRANSCRIPTION/DNA / COILED-COIL / DNA-BINDING PROTEIN / HETERODIMER / TRANSCRIPTION-DNA COMPLEX | ||||||
Function / homology | Function and homology information cAMP response element binding / transcription factor AP-1 complex / integrated stress response signaling / positive regulation of DNA-templated transcription initiation / release from viral latency / mononuclear cell differentiation / cellular response to prolactin / response to gravity / skeletal muscle cell proliferation / WNT5:FZD7-mediated leishmania damping ...cAMP response element binding / transcription factor AP-1 complex / integrated stress response signaling / positive regulation of DNA-templated transcription initiation / release from viral latency / mononuclear cell differentiation / cellular response to prolactin / response to gravity / skeletal muscle cell proliferation / WNT5:FZD7-mediated leishmania damping / cellular response to zinc ion starvation / cellular response to phorbol 13-acetate 12-myristate / conditioned taste aversion / SMAD protein signal transduction / NGF-stimulated transcription / positive regulation of osteoclast differentiation / positive regulation by host of viral transcription / cellular response to parathyroid hormone stimulus / myoblast proliferation / response to corticosterone / nuclear chromosome / Deregulated CDK5 triggers multiple neurodegenerative pathways in Alzheimer's disease models / Activation of the AP-1 family of transcription factors / ubiquitin-like protein ligase binding / negative regulation of DNA binding / skeletal muscle cell differentiation / R-SMAD binding / general transcription initiation factor binding / response to immobilization stress / response to light stimulus / Estrogen-dependent nuclear events downstream of ESR-membrane signaling / negative regulation by host of viral transcription / RNA polymerase II core promoter sequence-specific DNA binding / cellular response to epidermal growth factor stimulus / positive regulation of vascular associated smooth muscle cell proliferation / response to cAMP / cellular response to cadmium ion / cellular response to calcium ion / response to muscle stretch / NPAS4 regulates expression of target genes / response to endoplasmic reticulum stress / GTPase activator activity / transforming growth factor beta receptor signaling pathway / osteoclast differentiation / Regulation of PTEN gene transcription / response to activity / response to progesterone / female pregnancy / transcription coregulator binding / protein-DNA complex / TP53 Regulates Transcription of DNA Repair Genes / FCERI mediated MAPK activation / MAPK6/MAPK4 signaling / euchromatin / response to insulin / Signaling by ALK fusions and activated point mutants / response to toxic substance / Pre-NOTCH Transcription and Translation / DNA-binding transcription repressor activity, RNA polymerase II-specific / cellular response to reactive oxygen species / positive regulation of miRNA transcription / Activation of anterior HOX genes in hindbrain development during early embryogenesis / RNA polymerase II transcription regulator complex / sequence-specific double-stranded DNA binding / cellular response to tumor necrosis factor / nervous system development / regulation of cell population proliferation / cellular response to hypoxia / Senescence-Associated Secretory Phenotype (SASP) / DNA-binding transcription activator activity, RNA polymerase II-specific / Oxidative Stress Induced Senescence / Interleukin-4 and Interleukin-13 signaling / response to ethanol / Estrogen-dependent gene expression / RNA polymerase II-specific DNA-binding transcription factor binding / transcription regulator complex / response to lipopolysaccharide / transcription by RNA polymerase II / transcription cis-regulatory region binding / DNA-binding transcription factor activity, RNA polymerase II-specific / regulation of cell cycle / response to xenobiotic stimulus / inflammatory response / positive regulation of apoptotic process / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / negative regulation of DNA-templated transcription / ubiquitin protein ligase binding / chromatin binding / chromatin / regulation of transcription by RNA polymerase II / positive regulation of DNA-templated transcription / enzyme binding / negative regulation of transcription by RNA polymerase II / endoplasmic reticulum / positive regulation of transcription by RNA polymerase II / DNA binding / RNA binding / nucleoplasm / identical protein binding Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 3.05 Å | ||||||
Authors | Glover, J.N.M. / Harrison, S.C. | ||||||
Citation | Journal: Nature / Year: 1995 Title: Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA. Authors: Glover, J.N. / Harrison, S.C. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1fos.cif.gz | 102.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1fos.ent.gz | 74.6 KB | Display | PDB format |
PDBx/mmJSON format | 1fos.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fo/1fos ftp://data.pdbj.org/pub/pdb/validation_reports/fo/1fos | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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-Components
#1: DNA chain | Mass: 6271.092 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: DNA chain | Mass: 5994.890 Da / Num. of mol.: 2 / Source method: obtained synthetically #3: Protein | Mass: 7379.443 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Plasmid: PJUN(S)63 / Production host: Escherichia coli (E. coli) / Strain (production host): BL21/DE3/PLYSS / References: UniProt: P01100 #4: Protein | Mass: 7321.695 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Plasmid: PJUN(S)63 / Production host: Escherichia coli (E. coli) / Strain (production host): BL21/DE3/PLYSS / References: GenBank: 386839, UniProt: P05412*PLUS Sequence details | FOS SEQUENCE EXPRESSED CORRESPONDS TO RESIDUES 139 - 200 OF HUMAN P55-C-FOS PROTO-ONCOGENE PROTEIN. ...FOS SEQUENCE EXPRESSED CORRESPOND | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 3.53 Å3/Da / Density % sol: 65.18 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 6.7 Details: pH 6.70, VAPOR DIFFUSION, HANGING DROP, temperature 293.00K | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions |
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Crystal grow | *PLUS Temperature: 20 ℃ / pH: 6.7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Wavelength: 1.54 |
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Detector | Type: MARRESEARCH / Detector: IMAGE PLATE |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54 Å / Relative weight: 1 |
Reflection | Num. obs: 14316 / % possible obs: 91.1 % / Observed criterion σ(I): 1 |
Reflection | *PLUS % possible obs: 91.1 % / Observed criterion σ(I): 0 / Num. measured all: 76796 / Rmerge(I) obs: 0.09 |
-Processing
Software |
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Refinement | Resolution: 3.05→10 Å / Rfactor Rfree: 0.321 / Rfactor Rwork: 0.23 / Rfactor obs: 0.23 / σ(F): 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 3.05→10 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 3.05 Å / Lowest resolution: 10 Å / σ(F): 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |