+Open data
-Basic information
Entry | Database: PDB / ID: 1fhe | ||||||
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Title | GLUTATHIONE TRANSFERASE (FH47) FROM FASCIOLA HEPATICA | ||||||
Components | GLUTATHIONE TRANSFERASEGlutathione S-transferase | ||||||
Keywords | TRANSFERASE / DETOXIFICATION / GLUTATHIONE TRANSFERASE | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Fasciola hepatica (liver fluke) | ||||||
Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 3 Å | ||||||
Authors | Rossjohn, J. / Parker, M.W. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1997 Title: Crystallization, structural determination and analysis of a novel parasite vaccine candidate: Fasciola hepatica glutathione S-transferase. Authors: Rossjohn, J. / Feil, S.C. / Wilce, M.C. / Sexton, J.L. / Spithill, T.W. / Parker, M.W. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1fhe.cif.gz | 53.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1fhe.ent.gz | 39 KB | Display | PDB format |
PDBx/mmJSON format | 1fhe.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fh/1fhe ftp://data.pdbj.org/pub/pdb/validation_reports/fh/1fhe | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 25318.242 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Fasciola hepatica (liver fluke) Description: SECRETED AS A MONOMER, FORMS MEMBRANE-BOUND OLIGOMERS Cellular location: CYTOPLASM / Organ: LIVER / Production host: Escherichia coli (E. coli) / References: UniProt: P31670, glutathione transferase |
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#2: Chemical | ChemComp-GSH / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 4.6 Å3/Da / Density % sol: 75 % | |||||||||||||||||||||||||
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Crystal grow | pH: 8.4 / Details: AMMONIUM SULFATE, GLUTATHIONE, TRIS PH 8.4 | |||||||||||||||||||||||||
Crystal | *PLUS Density % sol: 52 % | |||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 22 ℃ / Method: vapor diffusion, hanging drop | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ROTATING ANODE / Type: RIGAKU / Wavelength: 1.5418 |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Oct 1, 1995 |
Radiation | Monochromator: GRAPHITE(002) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 3→30 Å / Num. obs: 9266 / % possible obs: 94.3 % / Rsym value: 0.11 |
Reflection shell | Resolution: 3→3.1 Å / Rsym value: 0.39 |
Reflection | *PLUS Rmerge(I) obs: 0.112 |
Reflection shell | *PLUS Rmerge(I) obs: 0.396 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: SCHISTOSOMA JAPONICUM GST Resolution: 3→30 Å / Data cutoff high absF: 10000000 / Data cutoff low absF: 0.001 / Cross valid method: THROUGHOUT / σ(F): 0
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Refinement step | Cycle: LAST / Resolution: 3→30 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 3→3.1 Å / Rfactor Rfree: 0.374 / Rfactor Rwork: 0.294 / Total num. of bins used: 8 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Software | *PLUS Name: X-PLOR / Version: 3.1 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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