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Yorodumi- PDB-1ekz: NMR STRUCTURE OF THE COMPLEX BETWEEN THE THIRD DSRBD FROM DROSOPH... -
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-Basic information
Entry | Database: PDB / ID: 1ekz | ||||||
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Title | NMR STRUCTURE OF THE COMPLEX BETWEEN THE THIRD DSRBD FROM DROSOPHILA STAUFEN AND A RNA HAIRPIN | ||||||
Components |
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Keywords | cell cycle/RNA / protein/RNA / protein dsRBD / Drosophila / RNA hairpin / cell cycle-RNA COMPLEX | ||||||
Function / homology | Function and homology information germ plasm / subsynaptic reticulum / pole plasm RNA localization / bicoid mRNA localization / regulation of oskar mRNA translation / pole plasm protein localization / posterior cell cortex / regulation of pole plasm oskar mRNA localization / asymmetric protein localization involved in cell fate determination / anterograde dendritic transport of messenger ribonucleoprotein complex ...germ plasm / subsynaptic reticulum / pole plasm RNA localization / bicoid mRNA localization / regulation of oskar mRNA translation / pole plasm protein localization / posterior cell cortex / regulation of pole plasm oskar mRNA localization / asymmetric protein localization involved in cell fate determination / anterograde dendritic transport of messenger ribonucleoprotein complex / RNA localization / positive regulation of cytoplasmic mRNA processing body assembly / pole plasm assembly / neuroblast fate determination / positive regulation of synaptic assembly at neuromuscular junction / basal cortex / neuronal ribonucleoprotein granule / anterior/posterior axis specification, embryo / messenger ribonucleoprotein complex / intracellular mRNA localization / protein localization to synapse / apical cortex / oogenesis / germ cell development / long-term memory / dendrite cytoplasm / basal plasma membrane / mRNA 3'-UTR binding / P-body / cytoplasmic ribonucleoprotein granule / cytoplasmic stress granule / double-stranded RNA binding / apical part of cell / cell cortex / neuron projection / apical plasma membrane / mRNA binding / neuronal cell body / RNA binding / plasma membrane / cytoplasm Similarity search - Function | ||||||
Biological species | Drosophila melanogaster (fruit fly) | ||||||
Method | SOLUTION NMR | ||||||
Authors | Ramos, A. / Grunert, S. / Bycroft, M. / St Johnston, D. / Varani, G. | ||||||
Citation | Journal: EMBO J. / Year: 2000 Title: RNA recognition by a Staufen double-stranded RNA-binding domain. Authors: Ramos, A. / Grunert, S. / Adams, J. / Micklem, D.R. / Proctor, M.R. / Freund, S. / Bycroft, M. / St Johnston, D. / Varani, G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ekz.cif.gz | 1.5 MB | Display | PDBx/mmCIF format |
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PDB format | pdb1ekz.ent.gz | 1.3 MB | Display | PDB format |
PDBx/mmJSON format | 1ekz.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ek/1ekz ftp://data.pdbj.org/pub/pdb/validation_reports/ek/1ekz | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 9612.737 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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#2: Protein | Mass: 8463.958 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Drosophila melanogaster (fruit fly) / Production host: Escherichia coli (E. coli) / References: UniProt: P25159 |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
NMR ensemble | Conformer selection criteria: structures with the least restraint violations, structures with the lowest energy Conformers calculated total number: 50 / Conformers submitted total number: 36 |
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