+Open data
-Basic information
Entry | Database: PDB / ID: 1du2 | ||||||
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Title | SOLUTION STRUCTURE OF THE THETA SUBUNIT OF DNA POLYMERASE III | ||||||
Components | DNA POLYMERASE IIIDNA polymerase III holoenzyme | ||||||
Keywords | TRANSFERASE / DNA polymerase / Alpha Helix | ||||||
Function / homology | Function and homology information DNA polymerase III, core complex / DNA polymerase III complex / lagging strand elongation / replisome / leading strand elongation / DNA-templated DNA replication / DNA-directed DNA polymerase / DNA-directed DNA polymerase activity / DNA binding / cytosol Similarity search - Function | ||||||
Biological species | Escherichia coli (E. coli) | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Authors | Keniry, M.A. / Berthon, H.A. / Yang, J.-Y. / Miles, C.S. / Dixon, N.E. | ||||||
Citation | Journal: Protein Sci. / Year: 2000 Title: NMR solution structure of the theta subunit of DNA polymerase III from Escherichia coli. Authors: Keniry, M.A. / Berthon, H.A. / Yang, J.Y. / Miles, C.S. / Dixon, N.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1du2.cif.gz | 488.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1du2.ent.gz | 422.9 KB | Display | PDB format |
PDBx/mmJSON format | 1du2.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/du/1du2 ftp://data.pdbj.org/pub/pdb/validation_reports/du/1du2 | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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NMR ensembles |
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-Components
#1: Protein | Mass: 8861.305 Da / Num. of mol.: 1 / Fragment: THETA SUBUNIT Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Plasmid: PCM869 / Production host: Escherichia coli (E. coli) / References: UniProt: P0ABS8, DNA-directed DNA polymerase |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: The structure was determined by double and triple resonance heteronuclear NMR spectroscopy techniques. There is evidence of substantial conformational exchange in sections of the chain that ...Text: The structure was determined by double and triple resonance heteronuclear NMR spectroscopy techniques. There is evidence of substantial conformational exchange in sections of the chain that severely limit the precision of the structure in these regions of the molecule. Specifically, conformational exchange occurs in the regions D19-M33 and L55-S63. |
-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 Details: The structures are based on 819 restraints, 511 are NOE-derived distance constraints, 300 dihedral angle restraints and 8 distance restraints from hydrogen bonds | ||||||||||||||||||||
NMR representative | Selection criteria: fewest violations | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 400 / Conformers submitted total number: 20 |